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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaatttttttatttcccttttttggaatgcattttagagctttggatttaaaaa...

Basic information

species Glycine max
transcript GLYMA16G23340.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 1
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaatttttttatttcccttttttggaatgcattttagagctttgg--atttaaaaa
 |||||||| || |||||||| ||||| ||||| |||||||| || ||||| ||||| || ||  |||| ||||||||||||  ||||||||||||||||||  ||  | || ||| |||| || |  |||||  |  |    |  |  |||| || ||   ||| |||    ||| | ||     |||    ||||   | 
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACCGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACTgtgcgtattcttcttcttcttcttcttcttcttcctccaaacatttcc-ttttcttcttcttcttctttcttttgcttcttctttttttaattatttttga-

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 1
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaattttttt----atttcccttttttggaatgcattttagagctttggatttaaaaa
 |||||||| || |||||||| ||||| ||||| |||||||| || ||||| ||||| || ||  |||| ||||||||||||  ||||||||||||||| ||  | || ||   ||||| || || | | |  ||   |   ||  || |||||||       ||||  |   ||| |     ||    |   |   || |   
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACCgtacgctccttc-ctcctcattgtt-gctccgctggaga--ggtttcatttttttttggggggtcccggtccgggattttgaattgcgacggcgttcttgatcg

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G803949_T01 (Zea mays), 5'ss of exon 1
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaatttttttatttcccttttttggaatgcattttagagctttggatttaaaaa-
 |||||||| || |||||||| ||||| ||||| |||||||| || ||||| ||||| || ||  |||| || |||||||||  ||||||||||||||| ||  |  | |      ||     |||   | ||| | |  | | |  | |      ||||    ||   |    |   || |  | | |||          
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACCgtacgcccctcctcctctgacggtttcaattttttttt-ctggggggagtccccggattttgaattgcggcggcggtcttgatcgatctggggcgcgctgg

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G51300.1 (Arabidopsis thaliana), 5'ss of exon 1
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaatttttttatttcccttttttggaatgcattttagagctttggatttaaaaa
 ||||||||||| |||||| | ||||| || || || || |||||||| || || |||||||||||| | || || ||||| |||||||| ||||| || ||||  | |   | |  |  |||  ||||||||  |  ||||   ||||       || || | | |||    |   ||||   | | |  |        
AATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGgtta--tgtcccaattattctttcatgtttcttgtttcatta-ccacaacaacaacatatctcatgtttcttgtttcttttgtggatatacag-------

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 2
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgt-ta--gttcttttattcctctttttttgtttctttgtg-tattagtgacaatttttttatttcccttttttg--gaatgc--attttagagctt-tgg--atttaaaaa----------------------------------------------------------------------------------
 ||||||||||| |||||||| ||||||||||| || || || ||||| || || ||||| |||||||| || || |||||||||||||| || || || || ||  |||| ||  ||    |   |    |||| |||  | | | | ||||  ||   | ||  ||| | |   || ||   |    | ||||| |||  ||  |  ||                                                                                  
AATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGgtataatgttccttccttagattgaatcatattctgtgttctgtgaattacaagcttcaaaattgtcttctctattgattgatgagaccaaagcttgtggcaatacatgaatcgatccataatttttttttggtgttatgaggatttgtggagctttgtatctcattgaatcttgtaaattcatgtggaacag

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 1
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaatttttttatt-tcccttttttggaatgcattttaga---gctttggat-ttaaaaa-----------------
 |||||||| || |||||||| ||||| ||||| || || |||||||| || || ||||| |||||||| || || || |||||||||||||| ||||| ||   ||| |  ||   |||   |   ||| ||  | | | | | |     || | ||| | || | | || | ||   |  | |    ||    || ||  | |                 
AATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACGgt--attcatcaatcattctccctcctttttttgatatctgattcatttgattctgattgtgccatatatgaattgggatccatacatactaaaaatgttgtatacatttccattggaacag

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 2
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctt-tgtgtattagtgacaattt----ttttatttcccttt------tttggaatgcattttagagctttggatttaaaaa
 ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||| | || |||||||| ||||||||||| |||||||| || ||| ||  | | ||   | |   ||||| | | ||     |||   |||      |||||| ||||        | |||||   |||||   |||||           
AATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTAGGGGATGGTGCCGTTGGCAAAACTTGTCTCCTTATCTCCTATACCAGCAACACTTTCCCCACGgtgagtcctcatttcccatatctagagtttcctatttgggcccgtggagattaggggctttattcccctccggatgatgtggaagaaattttctggcttt-----------

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ04304 (Selaginella moellendorffii), 5'ss of exon 1
ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaatttttttatttcccttttttggaatgcattttagagctttggatttaaaaa
|||||| |||| ||||| || || ||||||||||| || ||||| ||||| |||||||| ||  ||||||| || ||||| |||||||| || || ||||| || | |||| |||   ||   | |    | |     | | || |   ||                                                
ATGAGCACTTCCAGGTTTATTAAATGTGTCACTGTGGGAGATGGGGCCGTCGGCAAAACATGCATGCTAATTTCTTACACAAGCAACACTTTTCCTACTgtgagattttttcttctctttagatgggaattctaaccgtgaatgtctgattccag--------------------------------------------

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ16760 (Selaginella moellendorffii), 5'ss of exon 1
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttgtgtattagtgacaatttttttatttcccttttttggaatgcattttagagctttggatttaaaaa
 |||||| |||| ||||| || || ||||||||||| || ||||| ||||| |||||||| ||  ||||||| || ||||| |||||||| || || ||||| || | |||| |||   ||   | |    | |     | | || |   ||                                                
GATGAGCACTTCCAGGTTTATTAAATGTGTCACTGTGGGAGATGGGGCCGTCGGCAAAACATGCATGCTAATTTCTTACACAAGCAACACTTTTCCTACTgtgagattttttcttctctttagatgggaattctaaccgtgaatgtctgattccag--------------------------------------------

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ09765 (Selaginella moellendorffii), 5'ss of exon 1
-ATGAGCGCTTCTAGGTTCATCAAGTGTGTCACTGTCGGGGATGGAGCCGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTgttagttcttttattcctctttttttgtttctttg-tgtattagtgacaatttttttatttcccttttttggaatgcattttagagctttggatttaaaaa
 |||||| |||| || || |||||||| || || ||||| ||||| || |||||||| |||||  |||| || || ||||| |||||||| ||||||||||| || | |  | ||  |||||  || ||   |   | | || |       |  || ||   |                                      
CATGAGCACTTCAAGATTTATCAAGTGCGTTACCGTCGGAGATGGTGCGGTGGGCAAGACTTGCATGCTCATTTCATACACGAGCAACACTTTCCCCACTgtgagatttcgttttgttctttcctttttctctaactctcttgggctgggatcgttcatcaacag------------------------------------