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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCACTTCCTCCTGGGACCATGGGTTGGCCTTACATAGGAGAAACCTTCCAAATGTATTCTCAAGACCCAAATGTTTTCTTTGCCACAAAAATCAAGAGgttcataacatttcttttgtcattttcatcaaacttgttcatgaaaatgacttcttgtcttaacatactattatgtactattttggtacttgggattggggttaattgttcattcgttttgtattgtatttggtgctttcaaaag

Basic information

species Glycine max
transcript GLYMA16G20490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G20490.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G19230.1 (Arabidopsis thaliana), 5'ss of exon 1
TGCCACTTCCTCCTGGGACCATGGGTTGGCCTTACATAGGAGAAACCTTCCAAATGTATTCTCAAGACCCAAATGTTTTCTTTGCCACAAAAATCAAGAGgttcataacatttcttttgtcattttcatcaaacttg---ttcatgaaaatgacttcttgtcttaacatactattatgtactattttggtacttgggattggggttaattgttcattcgttttgtattgtatttggtgctttcaaaag
| ||||| ||||| || || ||||||||||||||| | |||||||| |||||  | || ||||||||||| ||||| || ||  | |  ||||   | | | |||   | ||         |  || || ||| | |   ||  |||||   | ||  ||   |   ||   |                                                                           
TCCCACTCCCTCCGGGAACAATGGGTTGGCCTTACGTCGGAGAAACTTTCCAGCTTTACTCTCAAGACCCTAATGTCTTTTTC-CAATCAAAACAGAAAAGgtcagtgctttaagaaccgaaaatttataaaaatcgaaatttttgaaagaaatttgatgatgttttatgacag--------------------------------------------------------------------------