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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCTCTGGCCAAGCAAGCAAAAATCAACCCTGCCACTGCTATCACCATTCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatataaccactagctacttcaacgtttcaaatttagcacgtactcaaattttgtagtacactagcacgtaggatccgtgcattgcacggttatt...

Basic information

species Glycine max
transcript GLYMA16G18700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405891|gb|EV275706.1|EV275706
EST:     TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAA                         GGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
genomic: TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatat ... ctctttacagGGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
EST: gi|192305724|gb|FG995694.1|FG995694
EST:     TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAA                         GGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
genomic: TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatat ... ctctttacagGGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
EST: gi|209705354|gb|BW667998.1|BW667998
EST:     TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAA                         GGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
genomic: TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatat ... ctctttacagGGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
EST: gi|209705339|gb|BW667997.1|BW667997
EST:     TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAA                         GGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
genomic: TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatat ... ctctttacagGGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
EST: gi|151404064|gb|EV273874.1|EV273874
EST:     TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAA                         GGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
genomic: TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatat ... ctctttacagGGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
EST: gi|192321519|gb|FK012883.1|FK012883
EST:     TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAA                         GGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
genomic: TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatat ... ctctttacagGGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
EST: gi|151407944|gb|EV277759.1|EV277759
EST:     TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAA                         GGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC
genomic: TCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatat ... ctctttacagGGTACACTGTACCTTGAAATCAAAACAATGGAATAATATGCAGTATTAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACCTCTGGCCAAGCAAGCAAAAATCAACCCTGCCACTGCTATCACCATTCCAAAAAGATGCAACATTAGGAACCGACCTGCTGGGAAGAAATGTGGAAgtaagtatataaccactagctacttcaacgtttcaaatttagcacgtactcaaattttgtagtacactagcacgtaggatccgtgcattgcacggttatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA