1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGGTGGAGCCAGGAGGCCCGTGAAGGAACGCCTTAATAATGGGAATGGCGTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatttctttactacgtgtttttatgatgatttttaatgttttgggcaagtagattttaaattgcggttatggtttcgacatgtggcctattcgg...
species | Glycine max |
transcript | GLYMA16G18440.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|298165973|gb|HO008944.1|HO008944
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|20813057|gb|BQ297535.1|BQ297535
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|21887733|gb|BQ740946.1|BQ740946
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|192310120|gb|FK002560.1|FK002560
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|298186415|gb|HO037048.1|HO037048
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGACGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|207753581|gb|GD725993.1|GD725993
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGTTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|192322959|gb|FK016690.1|FK016690
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|208052803|gb|GD853920.1|GD853920
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGACAAAGAATGACAGGTGGGEST: gi|213605604|gb|DB970719.1|DB970719
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGG-CAA-GA-TGACAAGTGGG
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|298182343|gb|HO026518.1|HO026518
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|8282692|gb|BE020253.1|BE020253
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|298195637|gb|HO044028.1|HO044028
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACCGGCGAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|192326148|gb|FK016265.1|FK016265
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|23730618|gb|BU763398.1|BU763398
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|298199056|gb|HO042419.1|HO042419
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|192296023|gb|FG989417.1|FG989417
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|16345083|gb|BI970678.1|BI970678
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|298166418|gb|HO010997.1|HO010997
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|192323212|gb|FK016343.1|FK016343
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTC-G--GCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|192327498|gb|FK019625.1|FK019625
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|7640437|gb|AW734739.1|AW734739
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|298197136|gb|HO041879.1|HO041879
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACCEST: gi|192329317|gb|FK020236.1|FK020236
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
EST: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAG GTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
genomic: GTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatt ... taaattgtagGTCGAGGCAAGATGACAAGTGGGAACATGATCTCTTCGACAATGACAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGTGGAGCCAGGAGGCCCGTGAAGGAACGCCTTAATAATGGGAATGGCGTCATTGGCTCTACTCGGCAGCAGCAGCAGCGTCAAATCACTGGCAAGAGgtttgcaatttctttactacgtgtttttatgatgatttttaatgttttgggcaagtagattttaaattgcggttatggtttcgacatgtggcctattcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA