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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCgtaattgtggtttcctccttaaataattcacctatatggaatatatggggatcattattcaaagaaactactactattagggtttcaatctcattgattt...

Basic information

species Glycine max
transcript GLYMA16G18030.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G54230.1 (Arabidopsis thaliana), 5'ss of exon 3
----------------------------------------------------ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCgtaattgtggtttcctccttaaata-attcacctatatggaatatatggggatcattattcaaagaaactact-actattagggtttcaatctcattgattt----------------------------------------------------------------------------------
                                                    ||||||||| |||| |||| ||  || ||||  |||||||||||||| ||||||||||||| ||||||| ||| ||      |||   || ||||    |    | ||   |    | ||| |    | | ||   |  ||        |                                                                                  
CTTTGAATATTCTCTCAGACCATCAAAGATTTGCTTGGTGCACTGGCCGGAAATGGATCCTAGTCGATATGGTCGTCAGCAAGAATGGGATAATAACAGTgtaattgtggttttctccttacatatatgggatgataaacaagatatttttagggatgttatgaatctcaactcatccgtggagtgagagacttgggagagtgaggatgtggatgggatttggctaatgtaatatccgtcaatgatgtttgttgctgacatagcttattctcttcaattcacag

upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 1
-----------ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCgtaattgtggtttcctccttaaataattcacctatatggaat----atatggggatc----attattcaaagaaactactactattagggtttcaatctcattgattt---------------------------------------------------------------------------------------------------
           |||||||| |||||||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||     |||||||||||| ||    |||   | |        | |||  |    | | |  |  | |  | |||  || |   |                                                                                                      
TCTGGCAAGAAATGGATCCAGGTCGCTATGGTCTCCAGCAAGGATGGGATAATAACAGCGTAATTGTGgtttcctccttaa-----tcacctatatgggatgataatacaagaaattagggctcttctgattgtccattttttatggcatctcatccttaagaacaatgagagaaagccgtggggcattgaggatatggaatggatttgcctacctcgtaccatgattatttgttgctgacatagcttattctcttgaatccacag