1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTGTCATCAGTGCCATCTCTGGTGTTCACATCAGGAGCCACAGCATCACTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttgaaccttctttttcttgctttttcttttgttatttcttaaatgaatagatattaaagccacagacaattagactattaaaatataatttgt...
species | Glycine max |
transcript | GLYMA16G17680.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTGCAACTCAAACTCGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|151406310|gb|EV276125.1|EV276125
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|192315077|gb|FK010447.1|FK010447
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|17401324|gb|BM178106.1|BM178106
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|192296141|gb|FG989021.1|FG989021
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|298192406|gb|HO036488.1|HO036488
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAGACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|298173082|gb|HO020066.1|HO020066
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGGATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|18717665|gb|BM522981.1|BM522981
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|17519561|gb|BM188603.1|BM188603
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|209703309|gb|BW653240.1|BW653240
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|14259293|gb|BG882201.1|BG882201
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|37994335|gb|CF806081.1|CF806081
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|209709206|gb|BW657175.1|BW657175
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|298195348|gb|HO039179.1|HO039179
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|38191444|gb|CF920650.1|CF920650
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|13478703|gb|BG508072.1|BG508072
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|7693412|gb|AW761505.1|AW761505
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCANACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|16348077|gb|BI973672.1|BI973672
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|151399718|gb|EV269589.1|EV269589
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|16104784|gb|BI892524.1|BI892524
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCAEST: gi|9259955|gb|BE348102.1|BE348102
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
EST: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAG CGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
genomic: CTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttg ... ttccctgtagCGTTTCTTGCCTTCTGAATTTGGCCTAGACCCAGCAAGGATGGGGCATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGTCATCAGTGCCATCTCTGGTGTTCACATCAGGAGCCACAGCATCACTCTGCAACTCAAACTTGTTGAGGCCATCAAAGAAGCTGGGAACGTTAAGgttagctttgaaccttctttttcttgctttttcttttgttatttcttaaatgaatagatattaaagccacagacaattagactattaaaatataatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG