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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATAAACGCCTCAGTCTCTCATTTCAGGGTGCAAAATCTTCCATGTATAAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAGgtaatgtaatcatgtctgtgtgcttttgctacttccttatcctttctctttcttcttcctccctgtcactgtttttgtttttgtttttgtcaaatttgtt...

Basic information

species Glycine max
transcript GLYMA16G17640.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481516|gb|AW200787.1|AW200787
EST:     AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAG                         GTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
genomic: AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAGgtaatgtaat ... attttctcagGTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
EST: gi|151398487|gb|EV268358.1|EV268358
EST:     AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAG                         GTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
genomic: AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAGgtaatgtaat ... attttctcagGTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
EST: gi|6481677|gb|AW200948.1|AW200948
EST:     AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAG                         GTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
genomic: AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAGgtaatgtaat ... attttctcagGTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
EST: gi|298163703|gb|HO012436.1|HO012436
EST:     AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAG                         GCTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
genomic: AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAGgtaatgtaat ... attttctcagGTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
EST: gi|298190599|gb|HO032720.1|HO032720
EST:     AAATATTACTATGTGCTCGCATTAACTGATTGATTTACTCCAAAATTTAG                         GTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT
genomic: AAATATTACTATGTGCTTGCATTAACTGATTGATTTACTCCAAAATTTAGgtaatgtaat ... attttctcagGTTCTAATGATTATAAAAGGATTGTTTGGAAGGTACGAAAGATGGAACCCT