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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCACCAAGAAGGCCAACGAGCTCACTGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCgtacgttttttttattctctatctcgtccaacaaaccctacctacctatcttctctcttatgtctttttcttttttcaag

Basic information

species Glycine max
transcript GLYMA16G17450.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17450.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g13460.t01 (Vitis vinifera), 5'ss of exon 1
ACACCACCAAGAAGGCCAACGAGCTCACTGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCgtacgttttttttattctctatctcgtccaacaaaccctacct-acctatcttc---tctcttatgtctttttcttttttcaag-----------------------------------
         |||||||||  |||||||||||||| || ||||| ||||||||||| || ||| ||||||| |||||||| |||||  | ||  | || ||         ||  | |   ||| || ||   |||||| ||||| |  |  |||    |   | | |  |  | |  ||    ||                                   
---------AGAAGGCCAGTGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATCATCATGCTCTCCAGTACTGGAAAGCTCCATGA-ATACATCAGTC--------CTTCCACTACgtatgtc-tctctcaaaccttacctcagatcgcttgaaattagtgaaggttactacggttgctgagaaaatgcaggaaaatcagaaaagtgaaaccgtttc