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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGAATGTGTCTCTCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttcatcgctttagagttttgttttcttctaattcgttgcgtttttggtttctactcgtaaatcatagttgtgtttgggattcacttaaagatgt...

Basic information

species Glycine max
transcript GLYMA16G17370.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298194867|gb|HO043339.1|HO043339
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298171485|gb|HO016517.1|HO016517
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGCTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298190321|gb|HO032442.1|HO032442
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCGATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298187819|gb|HO031776.1|HO031776
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298188828|gb|HO035521.1|HO035521
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|207758545|gb|GD726799.1|GD726799
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298176033|gb|HO015438.1|HO015438
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298174537|gb|HO017760.1|HO017760
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|209713134|gb|BW653843.1|BW653843
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298199481|gb|HO042844.1|HO042844
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298184300|gb|HO029513.1|HO029513
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|18038779|gb|BM307073.1|BM307073
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298191196|gb|HO038675.1|HO038675
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|26269595|gb|CA820658.1|CA820658
EST:     GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298186766|gb|HO037399.1|HO037399
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298189983|gb|HO032104.1|HO032104
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298184392|gb|HO029605.1|HO029605
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|7693301|gb|AW761395.1|AW761395
EST:     CGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: CGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|9564869|gb|BE474378.1|BE474378
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298189992|gb|HO032113.1|HO032113
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|17963591|gb|BM270338.1|BM270338
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|14258939|gb|BG881847.1|BG881847
EST:     GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298170572|gb|HO019196.1|HO019196
EST:     ACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: ACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298169024|gb|HO020384.1|HO020384
EST:     TCCGCAGCAGCCACACTTCCTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298175316|gb|HO015975.1|HO015975
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298185009|gb|HO030222.1|HO030222
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTCCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|208257218|gb|GE056689.1|GE056689
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|23726992|gb|BU761509.1|BU761509
EST:     GCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: GCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298198943|gb|HO042306.1|HO042306
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298183645|gb|HO028858.1|HO028858
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCGTAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|193484000|gb|FK452403.1|FK452403
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|20498416|gb|BQ273346.1|BQ273346
EST:     CCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: CCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|208122672|gb|GD923616.1|GD923616
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|17021966|gb|BM093000.1|BM093000
EST:     AGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: AGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298168564|gb|HO009494.1|HO009494
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAACGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|14999831|gb|BI320645.1|BI320645
EST:     GCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: GCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|209718652|gb|BW662730.1|BW662730
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: gi|298170562|gb|HO019186.1|HO019186
EST:     TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG                         GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCGAATGTGTCTCTCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttcatcgctttagagttttgttttcttctaattcgttgcgtttttggtttctactcgtaaatcatagttgtgtttgggattcacttaaagatgt

- - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA