Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAAGGTGATATATGGGCTGCCCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAATAAATTCCAAAAGCATAAATTGGCTCCGGTAGAGgtaagttgctttcaataaacactgtaaaactcttgtagtgtgtttatgagagtatgtcaactgaaattgcag

Basic information

species Glycine max
transcript GLYMA16G17320.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17320.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0087g00180.t01 (Vitis vinifera), 5'ss of exon 4
TCCTAAAGGTGATATATGGGCTGCCCCATATCGATGGGGCTGCATGGTAATAGCATACAAGACAAATAAATTCCAAAAGCATAAATTGGCTCCGGTAGAGgtaagttgctttcaataaacactgtaaaactcttgtagtgtgtttatgagagt-atgtcaac--tgaaattgcag-----------------------------
| || ||||| | ||||||||||| ||||||||||||||  ||||||| ||||||||||||| ||  |||||  |||||||||||||||||||  ||||||||| ||  ||| |      | | | | | | || | || | |||||     | |  ||||     | || |  |                             
TGCTGAAGGTAAAATATGGGCTGCTCCATATCGATGGGGAAGCATGGTGATAGCATACAAGAAAAGCAAATTTGAAAAGCATAAATTGGCTCCTATAGAGgtaaattattttta----gaattttgatagttttatcgtatctttattgtcttgaaatcaatatcaagatggttgtctgtcctatttgttggatatgtatataa