1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctagtgaccttcattctctccatatgctttttccttattgttttcattttttctactcttttgatcatttcttgttgtggggttggaagaagga...
species | Glycine max |
transcript | GLYMA16G17150.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|9986447|gb|BE660555.1|BE660555
genomic: ATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: TCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|23731779|gb|BU764032.1|BU764032
genomic: TCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: CCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|6455064|gb|AW185747.1|AW185747
genomic: CCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: AAACCACACCACCCCTTCTTCCTTTTCATCAA GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|298173936|gb|HO017272.1|HO017272
genomic: AAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|9986449|gb|BE660557.1|BE660557
genomic: ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: TCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|9986446|gb|BE660554.1|BE660554
genomic: TCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: CCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|6667580|gb|AW279031.1|AW279031
genomic: CCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: CAAACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|192301230|gb|FG990180.1|FG990180
genomic: CAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: ACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|163921421|gb|EH038959.1|EH038959
genomic: ACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: TCTAATTC-AACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTCCGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|7588006|gb|AW703811.1|AW703811
genomic: TCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: TTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|151395749|gb|EV265626.1|EV265626
genomic: TTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|298199322|gb|HO042685.1|HO042685
genomic: ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|7589352|gb|AW705128.1|AW705128
genomic: ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: CACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|9986448|gb|BE660556.1|BE660556
genomic: CACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: CACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|9986450|gb|BE660558.1|BE660558
genomic: CACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: TCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|9899585|gb|BE608553.1|BE608553
genomic: TCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: CCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|7589167|gb|AW704947.1|AW704947
genomic: CCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: ACCACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|6070716|gb|AW100103.1|AW100103
genomic: ACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: TTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|9986445|gb|BE660553.1|BE660553
genomic: TTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: ACACCACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|6724637|gb|AW309092.1|AW309092
genomic: ACACCACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: ACCCCTTCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAATEST: gi|5753417|gb|AI960704.1|AI960704
genomic: ACCCCTTCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
EST: TCTTCCTTTTCATCAG GTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
genomic: TCTTCCTTTTCATCAGgtcctcctag ... ctatgcacagGTTTATTCCTTTTCTTTTGGTTCAATTTTGCTGAATGGAGAGTGCAAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCACATTCTAATTCAAACCACACCACCCCTTCTTCCTTTTCATCAGgtcctcctagtgaccttcattctctccatatgctttttccttattgttttcattttttctactcttttgatcatttcttgttgtggggttggaagaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttg