1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAATGGTTAAATCTTCTTGTTTGTGTACTGCTATTGCTCAAGGCAGAAGGATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTGgtgagaattttttgttgtgacattagggaactataattctccagtgcttctatttttagcaatatttatataatagatgatatattgaagcttaacgtgtcatgcag
species | Glycine max |
transcript | GLYMA16G17120.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGTCCCCCAGCTTACCACTTTGATAAGGGATTTGGGGEST: gi|7285556|gb|AW598043.1|AW598043
genomic: ATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTGgtgagaattt ... tgtcatgcagTTTGTTTGGATGGAAGTCCCCCAGCTTACCACTTTGATAAGGGATTTGGGG
EST: ATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGTCCCCCAGCTTACCACTTTGATAAGGGATTTGGGGEST: gi|298176437|gb|HO026672.1|HO026672
genomic: ATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTGgtgagaattt ... tgtcatgcagTTTGTTTGGATGGAAGTCCCCCAGCTTACCACTTTGATAAGGGATTTGGGG
EST: ATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGTCCCCCAGCTTACCACTTTGATAAGGGATTTGGGG
genomic: ATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTGgtgagaattt ... tgtcatgcagTTTGTTTGGATGGAAGTCCCCCAGCTTACCACTTTGATAAGGGATTTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGGTTAAATCTTCTTGTTTGTGTACTGCTATTGCTCAAGGCAGAAGGATCTTTAGTTCCATTGATTTTGGTCGAGAATGCAGAATCAAAAGGAGCTGgtgagaattttttgttgtgacattagggaactataattctccagtgcttctatttttagcaatatttatataatagatgatatattgaagcttaacgtgtcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT