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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAAAACATGGGAAAACAGAGCACAGAATTCTCTGCCCTCAACTGCATCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgcttcctcaattcactttgttttttgaaccatgattttttatcatgtcatattaatgttttttgtttttgtttttag

Basic information

species Glycine max
transcript GLYMA16G08470.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183235|gb|HO028220.1|HO028220
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
EST: gi|24135790|gb|BU926300.1|BU926300
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
EST: gi|298181471|gb|HO022910.1|HO022910
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
EST: gi|298166108|gb|HO009079.1|HO009079
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
EST: gi|298179589|gb|HO026970.1|HO026970
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
EST: gi|19345789|gb|BM890669.1|BM890669
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
EST: gi|151412168|gb|EV281980.1|EV281980
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
EST: gi|254340856|gb|GR854584.1|GR854584
EST:     TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAG                         GCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG
genomic: TCGACCTCTCCAACCCTGACATCAACCAATCCGTCAATTTACTCAAACAGgtttttgctt ... ttgtttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAG