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CTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttcttttaacaatttatcattgcttttttcgtttccccaagaaatacgaccaattttattttgttgattcagctgaattgcccttcgagttacaa...
species | Glycine max |
transcript | GLYMA16G08200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCAACACCCTCGGAACCCC-AAAGACACCCC-GACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|298189796|gb|HO038199.1|HO038199
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|298185952|gb|HO031113.1|HO031113
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|15662381|gb|BI699752.1|BI699752
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|193552638|gb|FK506161.1|FK506161
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: TCAACACCCTCGGAA-CCCCAAACGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|37994080|gb|CF805826.1|CF805826
genomic: TCAACACCCTCGGAACCCCCAAA-GACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|7686453|gb|AW757101.1|AW757101
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|209725412|gb|BW651556.1|BW651556
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|298196583|gb|HO041326.1|HO041326
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|193483117|gb|FK448440.1|FK448440
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|154204866|gb|EV555128.1|EV555128
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGACACATCAGCTAAEST: gi|193708294|gb|FK643202.1|FK643202
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|208150896|gb|GD946013.1|GD946013
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGGCACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|208330637|gb|GE126366.1|GE126366
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|192299164|gb|FG992895.1|FG992895
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATACTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|209702008|gb|BW683185.1|BW683185
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|208144811|gb|GD941204.1|GD941204
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTEST: gi|192296912|gb|FG990258.1|FG990258
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATT
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|193488148|gb|FK453185.1|FK453185
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACA-CCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|19452417|gb|BM953827.1|BM953827
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAAEST: gi|9565390|gb|BE474899.1|BE474899
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
EST: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACT CCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
genomic: GTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttctt ... gaacttgcagCCACAAGACAAGACTACATATTGGGCAATTGGTGAAAGATACATCAGCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttcttttaacaatttatcattgcttttttcgtttccccaagaaatacgaccaattttattttgttgattcagctgaattgcccttcgagttacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc