Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGAGCGTGTCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttcatcgttttcttttcttctaattcattgcatttttggtttctatgcatagagtatcattgtatttgggctttatttaaagatgttcaaatta...

Basic information

species Glycine max
transcript GLYMA16G08090.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722147|gb|BW659338.1|BW659338
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|57575842|gb|CX548813.1|CX548813
EST:     GTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: GTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298197042|gb|HO041729.1|HO041729
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTTAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298188363|gb|HO035056.1|HO035056
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|58025292|gb|CX712033.1|CX712033
EST:     GTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: GTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298167525|gb|HO012788.1|HO012788
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298191600|gb|HO039079.1|HO039079
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|14011765|gb|BG726687.1|BG726687
EST:     CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|4289624|gb|AI441502.1|AI441502
EST:     CGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|42722905|gb|CK768804.1|CK768804
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|11688003|gb|BF595679.1|BF595679
EST:     CCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|192333930|gb|FK024743.1|FK024743
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|19936920|gb|BQ081066.1|BQ081066
EST:     CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298174143|gb|HO017479.1|HO017479
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|192323376|gb|FK017077.1|FK017077
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298182976|gb|HO028239.1|HO028239
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|192332197|gb|FK023846.1|FK023846
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|192311408|gb|FK003501.1|FK003501
EST:     CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298176355|gb|HO023056.1|HO023056
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|7042773|gb|AW472667.1|AW472667
EST:     GCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: GCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298180531|gb|HO025618.1|HO025618
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|209722700|gb|BW657954.1|BW657954
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298177413|gb|HO027194.1|HO027194
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|192311409|gb|FK003502.1|FK003502
EST:     CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|19934368|gb|BQ079398.1|BQ079398
EST:     CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298172584|gb|HO019624.1|HO019624
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|192297096|gb|FG988192.1|FG988192
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGCA-ATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAG-ATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGA
EST: gi|192306965|gb|FK002659.1|FK002659
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|151409204|gb|EV279012.1|EV279012
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|33388395|gb|CA851602.1|CA851602
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCANGNGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298170959|gb|HO015935.1|HO015935
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|17153985|gb|BM143918.1|BM143918
EST:     CCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|192332787|gb|FK026788.1|FK026788
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|151397933|gb|EV267806.1|EV267806
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|7232255|gb|AW567612.1|AW567612
EST:     GCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: GCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|298185148|gb|HO030361.1|HO030361
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATAGTTGAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|58018052|gb|CX704794.1|CX704794
EST:     CGCCGTTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: CGCCG-TTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
EST: gi|16997107|gb|BM086479.1|BM086479
EST:     CAGCTCAAGAGCCACCAGCAG                         GTAAGCA-ATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGA
genomic: CAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAG-ATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGA
EST: gi|192299168|gb|FG992899.1|FG992899
EST:     TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAG                         GTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA
genomic: TCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttca ... tcatttgtagGTAAGATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGAGCGTGTCTCTCCGCAGCAGCCTTCTTCGCCGTTTCAGCTCAAGAGCCACCAGCAGgttgttttcatcgttttcttttcttctaattcattgcatttttggtttctatgcatagagtatcattgtatttgggctttatttaaagatgttcaaatta

- - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - AGCTCA