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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCTTCATCGTTGCTCACAAGAAGGCCTCCCTCAACAGACTCAAGTCCGGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccgatctaccatgaattgttcatctttttcttcaattttcagttttcgttgtcttagatcccaattcccccatttgcatgcatgccctcattc...

Basic information

species Glycine max
transcript GLYMA16G05530.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05530.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0068g01370.t01 (Vitis vinifera), 5'ss of exon 1
TTCCCTTCATCGTTGCTCACAAGAAGGCCTCCCTCAACAGACTCAAGTCCGGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccgatctaccatgaattgttcatctttttcttcaattttcagttttcgttgtcttagatcccaat-tcccccatttgcat--gcatgccctcattc-----
|||| ||||| || || |||||||||||||| |||| ||| || ||||||||||||||  | ||||||||  |||||||||||| ||| |||||| || |||||| |   ||   |  | |       ||||  |   | || | |  |  |  |   |||  ||||| ||| |     ||||| ||  || | |  | |        
TTCCGTTCATTGTGGCCCACAAGAAGGCCTCTCTCACCAGGCTTAAGTCCGGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttcatt--ctgttag------atctgatatgttaactatgtggatctgccctctctgatccaaatattttatatttgaattagctttctttaaaatttctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995718|gb|CF807307.1|CF807307
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|58019764|gb|CX706506.1|CX706506
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|207774423|gb|GD746289.1|GD746289
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|13791399|gb|BG653990.1|BG653990
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|213617119|gb|DB963592.1|DB963592
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|17401673|gb|BM178455.1|BM178455
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|192328456|gb|FK020730.1|FK020730
EST:     AGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: AGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|4299243|gb|AI442876.1|AI442876
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|208093923|gb|GD893172.1|GD893172
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|6914631|gb|AW396153.1|AW396153
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|26056181|gb|CA799095.1|CA799095
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|192310732|gb|FK001156.1|FK001156
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|7589987|gb|AW705750.1|AW705750
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|254347231|gb|GR853480.1|GR853480
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|254347232|gb|GR853481.1|GR853481
EST:     CGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: CGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|7588956|gb|AW704740.1|AW704740
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|19269510|gb|BM885766.1|BM885766
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|19269735|gb|BM885991.1|BM885991
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|192326907|gb|FK019199.1|FK019199
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|16346823|gb|BI972418.1|BI972418
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|7925531|gb|AW831557.1|AW831557
EST:     TCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: TCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|19268686|gb|BM884942.1|BM884942
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|151410082|gb|EV279890.1|EV279890
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|192296517|gb|FG989838.1|FG989838
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|7041985|gb|AW471879.1|AW471879
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|208280687|gb|GE080997.1|GE080997
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|208122716|gb|GD921840.1|GD921840
EST:     TCGTCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: -CG-CCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|192294092|gb|FG986181.1|FG986181
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|58019284|gb|CX706026.1|CX706026
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|16997127|gb|BM086499.1|BM086499
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|23064011|gb|BU578784.1|BU578784
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|21994234|gb|BQ785762.1|BQ785762
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|57574562|gb|CX547537.1|CX547537
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|7286236|gb|AW598723.1|AW598723
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|31561271|gb|CD487109.1|CD487109
EST:     GGCGCCGAAAGGGTCGGCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|254345416|gb|GR855859.1|GR855859
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|31460384|gb|CD402352.1|CD402352
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|9439886|gb|BE440398.1|BE440398
EST:     CCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: CCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|10710516|gb|BF010234.1|BF010234
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|151403836|gb|EV273646.1|EV273646
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|207750066|gb|GD726020.1|GD726020
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
EST: gi|9203581|gb|BE329805.1|BE329805
EST:     GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTC                         GACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT
genomic: GGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccg ... ttttttaaagGACGGCCTATGATGTAAGCTTATCAGACGATAGCTGGCCAAGTGATGCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCCTTCATCGTTGCTCACAAGAAGGCCTCCCTCAACAGACTCAAGTCCGGCGCCGAAAGGGTCTCCGTCACCATCGACATCTTCAACCAAGGAACCTCgtacgctccgatctaccatgaattgttcatctttttcttcaattttcagttttcgttgtcttagatcccaattcccccatttgcatgcatgccctcattc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc