Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCATTCGGCAGAAACTACGTTCCCACTTGGGCTTTTGATCACATCAAATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaatatattacctcttctccacatcacaccacatacatgtagaatacaacaaacaagtttatgaaaacatcccttattatatatttagttgttaacttgggtatgttaatttttcatgtttcatacaattttcattag

Basic information

species Glycine max
transcript GLYMA16G04960.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298568|gb|FG988524.1|FG988524
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|192323920|gb|FK015671.1|FK015671
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|9203732|gb|BE329956.1|BE329956
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|192296733|gb|FG993031.1|FG993031
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|192308008|gb|FG998991.1|FG998991
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|21677268|gb|BQ629619.1|BQ629619
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|9898982|gb|BE607950.1|BE607950
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|18734985|gb|BM528499.1|BM528499
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|192307523|gb|FK002041.1|FK002041
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|192327911|gb|FK022456.1|FK022456
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|192296130|gb|FG989490.1|FG989490
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
EST: gi|192324285|gb|FK018261.1|FK018261
EST:     ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA
genomic: ATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaata ... ttttcattagGTACTGGCTTCCAGTCCAAAGGGTCATACTTGTTTGGTCACTTCAGCATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCATTCGGCAGAAACTACGTTCCCACTTGGGCTTTTGATCACATCAAATACTTCAATGGAGGTTCTGAGATTCAACTTCATCTTGACAAGTACACTGgtacgtaatatattacctcttctccacatcacaccacatacatgtagaatacaacaaacaagtttatgaaaacatcccttattatatatttagttgttaacttgggtatgttaatttttcatgtttcatacaattttcattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG