Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAATTTGGCCGAAACTACGTGCCCACATGGGCCTTTGATCACATCAAATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataacttcttcattcctatgtagatggctttagaaatttcatgagtgatatgagtatatgaccaaaatagtgaagactaactctcacgagtcga...

Basic information

species Glycine max
transcript GLYMA16G04950.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4314110|gb|AI461229.1|AI461229
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|192324897|gb|FK015378.1|FK015378
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|24136885|gb|BU927395.1|BU927395
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|208298111|gb|GE091044.1|GE091044
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACT
EST: gi|19053688|gb|BM732355.1|BM732355
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|14126334|gb|BG790772.1|BG790772
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|19269784|gb|BM886040.1|BM886040
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|16346473|gb|BI972077.1|BI972077
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|11412008|gb|BF424019.1|BF424019
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|208182833|gb|GD986935.1|GD986935
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|193668121|gb|FK610693.1|FK610693
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGT
EST: gi|208314168|gb|GE117760.1|GE117760
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|7691975|gb|AW760091.1|AW760091
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|16996918|gb|BM086290.1|BM086290
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|10239027|gb|BE807915.1|BE807915
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|19052636|gb|BM731303.1|BM731303
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|12773290|gb|BG238217.1|BG238217
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|208149456|gb|GD944590.1|GD944590
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|193454486|gb|FK420339.1|FK420339
EST:     ATATTTCAATGGTGGTTCTGACATACAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGT
EST: gi|207710962|gb|GD693480.1|GD693480
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAACATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|15813096|gb|BI785371.1|BI785371
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|6566722|gb|AW234354.1|AW234354
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|192327271|gb|FK019548.1|FK019548
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|6726859|gb|AW311278.1|AW311278
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|16996796|gb|BM086178.1|BM086178
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|208326536|gb|GE120246.1|GE120246
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|193490330|gb|FK454111.1|FK454111
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGG
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGG
EST: gi|17022538|gb|BM093572.1|BM093572
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|208079997|gb|GD874183.1|GD874183
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCANCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|15337235|gb|BI497891.1|BI497891
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|14258870|gb|BG881778.1|BG881778
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|193554119|gb|FK514242.1|FK514242
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTC
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTC
EST: gi|21678471|gb|BQ630822.1|BQ630822
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|207806463|gb|GD776994.1|GD776994
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTG
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTG
EST: gi|5770394|gb|AI973568.1|AI973568
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|208069825|gb|GD870460.1|GD870460
EST:     GGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: GGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|18732892|gb|BM527308.1|BM527308
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|193679301|gb|FK619735.1|FK619735
EST:     ATNTTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGG
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGG
EST: gi|9258985|gb|BE347132.1|BE347132
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTGCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|9259378|gb|BE347525.1|BE347525
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|193370071|gb|FK337263.1|FK337263
EST:     ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTG                         GTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
EST: gi|16105996|gb|BI893736.1|BI893736
EST:     ATATTTCAATGGTGG-TCTGACATTCAGCTTCATCTTGACAAGTTTTTTG                         TTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT
genomic: ATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataa ... ctttgtacagGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACAATTTGGCCGAAACTACGTGCCCACATGGGCCTTTGATCACATCAAATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGgtgcgtataacttcttcattcctatgtagatggctttagaaatttcatgagtgatatgagtatatgaccaaaatagtgaagactaactctcacgagtcga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT