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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgcttcttcttttttgacgtgtttgattgcttcttctaatgcttgagttttaacctaaaatctgtgaacattgaag

Basic information

species Glycine max
transcript GLYMA16G03170.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7041875|gb|AW471769.1|AW471769
EST:     AGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|192315894|gb|FK008595.1|FK008595
EST:     AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|298198310|gb|HO039849.1|HO039849
EST:     TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|15336852|gb|BI497508.1|BI497508
EST:     GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|4397465|gb|AI496462.1|AI496462
EST:     GCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: GCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|19268986|gb|BM885242.1|BM885242
EST:     CTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: CTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|192308475|gb|FK001377.1|FK001377
EST:     AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACGGAAATCAAAAGCCTACTTCAAGAGGTATCGAGTC
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|209701098|gb|BW664200.1|BW664200
EST:     TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|192317627|gb|FK007581.1|FK007581
EST:     AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|7233168|gb|AW568517.1|AW568517
EST:     AAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|151393465|gb|EV263340.1|EV263340
EST:     TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: TAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|7284984|gb|AW597471.1|AW597471
EST:     AGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|15814259|gb|BI786534.1|BI786534
EST:     GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: GAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|192315893|gb|FK008594.1|FK008594
EST:     AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|151412354|gb|EV282166.1|EV282166
EST:     AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGCCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|42722855|gb|CK768754.1|CK768754
EST:     GGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: GGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
EST: gi|192317628|gb|FK007582.1|FK007582
EST:     AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATG                         GTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC
genomic: AAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgc ... aacattgaagGTTTACGTGAAGTCACAGAAATCAAAAGCCTACTTCAAGAGGTATCAAGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTAAACCCCAAAGAGACTCAGGCGCTGCTGCCCTTCAGTCCTTCAGCAATGgtgagtgcgcttcttcttttttgacgtgtttgattgcttcttctaatgcttgagttttaacctaaaatctgtgaacattgaag

- - - - - - AAGAGA
- - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - -  TGCTGC