1 5' 3' | 2 5' 3' |
CAAGCTTCTTCGCTTCAATGCTCTCGCTAAACCTCATGCTCACACACGTGCTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGgtgaccctttgtccttctctcttcgtttttgcttaaaaaatctctgcctttttttggatgggtattgattctctcaaattgttttggttcaaaaagttta...
species | Glycine max |
transcript | GLYMA16G02090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTG CTTGTTACAAAAGGGGAAGGGTTGGAGCTCTATGAAGATATGATATTAGGGEST: gi|213618280|gb|DB973050.1|DB973050
genomic: CTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGgtgacccttt ... gtgagtacagCTTGTTACAAAAGAGGAAGGGTTGGAGCTCTATGAAGATATGATATTAGGG
EST: CTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTG CTTGTTACAAAAGAGGAAGGGTTGGAGCTCTATGAAGATATGATATTAGGGEST: gi|298175380|gb|HO015013.1|HO015013
genomic: CTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGgtgacccttt ... gtgagtacagCTTGTTACAAAAGAGGAAGGGTTGGAGCTCTATGAAGATATGATATTAGGG
EST: CTTCTTCTTCCCCTGTTGCTGCTGCTCTTCTCGAACGAACCTCCAATCTG CTTGTTACAAAAGAGGAAGGGTTGGAGCTCTATGAAGATATGATATTAGGG
genomic: CTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGgtgacccttt ... gtgagtacagCTTGTTACAAAAGAGGAAGGGTTGGAGCTCTATGAAGATATGATATTAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCTTCTTCGCTTCAATGCTCTCGCTAAACCTCATGCTCACACACGTGCTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGgtgaccctttgtccttctctcttcgtttttgcttaaaaaatctctgcctttttttggatgggtattgattctctcaaattgttttggttcaaaaagttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc