1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAATAATCGCCAATGGCAATTGAACACGAAGACGATCTCAAAGACGAGAAGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttcctccctccgaaaccctaatttcctaattcctcttttttggtttaggccaagcagatcttggttcttgcaggaattatatctctacttgtg...
species | Glycine max |
transcript | GLYMA16G01810.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTAC GGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAAEST: gi|24205597|gb|BU964850.1|BU964850
genomic: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttc ... gcttccacagGGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAA
EST: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTAC GGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAAEST: gi|193388500|gb|FK356213.1|FK356213
genomic: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttc ... gcttccacagGGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAA
EST: AGAA-CCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTAC GGTTTGGGACCTTATTCCACAAGCAT-AAAAAGGCGGAGAAGGAAATCAAAEST: gi|254319386|gb|GR829006.1|GR829006
genomic: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttc ... gcttccacagGGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAA
EST: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTAC GGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAAEST: gi|209717050|gb|BW668704.1|BW668704
genomic: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttc ... gcttccacagGGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAA
EST: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTAC GGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAA
genomic: AGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttc ... gcttccacagGGTTTGGGACCTTATTCCACAAGCATAAAAAAGGCGGAGAAGGAAATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATAATCGCCAATGGCAATTGAACACGAAGACGATCTCAAAGACGAGAAGAACCCTCGACCCCTCGACGAGGATGACATCGCCCTCCTCAAAACCTACgtatgctttcctccctccgaaaccctaatttcctaattcctcttttttggtttaggccaagcagatcttggttcttgcaggaattatatctctacttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc