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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACTAAAAAAATGGTGCTGGATCCAGCAAGGCTGGTGCTGGTGCTTTTGATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttttctctgatctcactctcagctttgcacttttcatcactctgtgtgtgtgaccattgtgctagtgttagttaagtctacttctttctttgt...

Basic information

species Glycine max
transcript GLYMA16G01790.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208143024|gb|GD941888.1|GD941888
EST:     GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACG                         TTACTTCTCTAAAGGTTTTGTTTCAAAGTATGGACTCACCTTCCCAGCTAA
genomic: GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttt ... tttgatgcagTTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
EST: gi|213603704|gb|DB956269.1|DB956269
EST:     GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACG                         TTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
genomic: GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttt ... tttgatgcagTTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
EST: gi|192296122|gb|FG989482.1|FG989482
EST:     GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACG                         TTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
genomic: GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttt ... tttgatgcagTTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
EST: gi|213603106|gb|DB960411.1|DB960411
EST:     GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACG                         TTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
genomic: GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttt ... tttgatgcagTTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
EST: gi|209708087|gb|BW671103.1|BW671103
EST:     GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACG                         TTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
genomic: GATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttt ... tttgatgcagTTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
EST: gi|208299932|gb|GE099711.1|GE099711
EST:     CACCTGCGTTTTGGCCATCAATGGTGACACAGATCCAAATGACG                         TTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA
genomic: CACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttt ... tttgatgcagTTACTTCTCTAAAGGTTTTGTTTCAAAGTATGAACTCACCTTCCCAGCTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCACTAAAAAAATGGTGCTGGATCCAGCAAGGCTGGTGCTGGTGCTTTTGATCAGCACCTGCATTTTGGCCATCAATGGTGACACAGATCCAAATGACGgttagtgttttctctgatctcactctcagctttgcacttttcatcactctgtgtgtgtgaccattgtgctagtgttagttaagtctacttctttctttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcactctc