1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTGTCGCCACAGTTGGTGGTGGCGGGGGGAGAGAGAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactataatatttttcaatcttcattcattctctcagttgctcaaaatctttgctctctctctaactctgtgtgcatttgaacaaaag
species | Glycine max |
transcript | GLYMA16G01410.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG TTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCTEST: gi|192330603|gb|FK021936.1|FK021936
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactataat ... tgaacaaaagTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG TTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCTEST: gi|192328840|gb|FK022584.1|FK022584
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactataat ... tgaacaaaagTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
EST: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAG TTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
genomic: GTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactataat ... tgaacaaaagTTATATCCGGTAATCTTGATGATTTGATGCCACCACCGGAGAGACCCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTCGCCACAGTTGGTGGTGGCGGGGGGAGAGAGAGAGAGAGAGAGATGTCGAGATTGCGAAGACTGATCCAAGCTTCAGTTGATGCTACTAAGAAAGgtactataatatttttcaatcttcattcattctctcagttgctcaaaatctttgctctctctctaactctgtgtgcatttgaacaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA