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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGTCTGTTAATGGTGGCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcattcacttcaaatttatcttcatttcttctttttcccttttacaaaatattgccctaacttttctttcttcttaaattccacctttttttcctaccctttcag

Basic information

species Glycine max
transcript GLYMA16G00400.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602199|gb|DB962692.1|DB962692
EST:     TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: gi|209717538|gb|BW679672.1|BW679672
EST:     TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: gi|26047783|gb|CA784461.1|CA784461
EST:     CTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: CTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: gi|26048721|gb|CA785174.1|CA785174
EST:     TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: gi|4295066|gb|AI442280.1|AI442280
EST:     TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: gi|209719804|gb|BW674956.1|BW674956
EST:     TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: gi|20813050|gb|BQ297528.1|BQ297528
EST:     TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGATAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
EST: gi|151403853|gb|EV273663.1|EV273663
EST:     TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGA                         GATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG
genomic: TTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcatt ... accctttcagGATAGTGAGCCTGACATCATTGATGGTTTGGGTGCTGAGACTGGTCACGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGTCTGTTAATGGTGGCTTCAGGGGTTCTTCCAGTTCCGTCGATTGGCTTGGCAGAGAGATGCTTGAGATGTCTTTGAGAGACCACGAGGACGTTAGAgtcagtcattcacttcaaatttatcttcatttcttctttttcccttttacaaaatattgccctaacttttctttcttcttaaattccacctttttttcctaccctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG