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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGTTTTCTTCTTCATCATAGTCGTGGCCGTGTCGCAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcctttctattcttttttttttttctttcttgcgcaaacaacaattttggtttatgaatctgaatggaaatgggtgtag

Basic information

species Glycine max
transcript GLYMA16G00360.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332370|gb|FK026035.1|FK026035
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|193512530|gb|FK469084.1|FK469084
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|213607318|gb|DB965148.1|DB965148
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|209699300|gb|BW670264.1|BW670264
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|193489768|gb|FK456825.1|FK456825
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|193451323|gb|FK417883.1|FK417883
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|209708258|gb|BW678630.1|BW678630
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAAC
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAAC
EST: gi|213587829|gb|DB959653.1|DB959653
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|192322478|gb|FK014959.1|FK014959
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCGCGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|213615347|gb|DB963541.1|DB963541
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|17023211|gb|BM094245.1|BM094245
EST:     CATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|213617072|gb|DB961552.1|DB961552
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|209714829|gb|BW674315.1|BW674315
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|213596059|gb|DB966306.1|DB966306
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|209706650|gb|BW676159.1|BW676159
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|213600558|gb|DB960106.1|DB960106
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
EST: gi|213611109|gb|DB972697.1|DB972697
EST:     CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTG                         ATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG
genomic: CAGCAAAACCAAACCACATATTAACTTGTTTGCTCTAAGTCATGGCTCTGgtgagtttcc ... atgggtgtagATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCG