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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCGgtacgctcttccctccgattccaaaaccctaactagttttccatttcattcttcattcttcattgttccgattcacgatccctctgccaccttgtacctttttcttcatccgattttttttaattaatatttttttaatgcttccaagtccctaacactgacgagctggtgcag

Basic information

species Glycine max
transcript GLYMA15G42300.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324396|gb|FK015747.1|FK015747
EST:     TCTTCTCCTTGCTTTGACCTTTTGCCG                         GTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
genomic: TCTTCTCCTTGCTTTGACCTTTTGCCGgtacgctctt ... gctggtgcagGTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     CTTGCTTTGACCTTTTGCCG                         GTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
genomic: CTTGCTTTGACCTTTTGCCGgtacgctctt ... gctggtgcagGTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
EST: gi|19052548|gb|BM731215.1|BM731215
EST:     CTTGCTTTGACCTTTTGCCG                         GTTGTTGAATTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
genomic: CTTGCTTTGACCTTTTGCCGgtacgctctt ... gctggtgcagGTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
EST: gi|213591664|gb|DB969764.1|DB969764
EST:     GAATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCG                         GTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
genomic: GAATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCGgtacgctctt ... gctggtgcagGTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
EST: gi|213588618|gb|DB957654.1|DB957654
EST:     GAATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCG                         GTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
genomic: GAATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCGgtacgctctt ... gctggtgcagGTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
EST: gi|213604537|gb|DB970657.1|DB970657
EST:     ATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCG                         GTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
genomic: ATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCGgtacgctctt ... gctggtgcagGTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
EST: gi|151410306|gb|EV280121.1|EV280121
EST:     GAATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCG                         GTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC
genomic: GAATCCGATCTTTCTTCTCCTTGCTTTGACCTTTTGCCGgtacgctctt ... gctggtgcagGTTGTTGTGTTGCATTGGTGCAAATGGCGTTCTTCAGAAGCGTTTCTGCAC