Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg...

Basic information

species Glycine max
transcript GLYMA15G42150.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g42450.1 (Oryza sativa), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatagt--gatttcctttgcattgttcttagt-gttttttacaatggaatgatatg--
|||  |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||||| ||||||| | || || ||| || | ||       ||   | ||  | |   |   ||||  | | ||| |    | | |  |     | |    || | | | | |       |||| ||  
GAGCAGGACATCCAGATGATGCTCGCCGCGGACGTCCACCTCGGCACCAAGAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCACTGACGgt-accgatctga----aaccccccccctctgcctgcattatactcagatactcttgtgtacgatcgtcggctaccggtagatctgttcgtgttgttgatttgat

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g08440.2 (Oryza sativa), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgt---cactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgt-tttttacaatggaatgatatg
|||  |||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| ||||||| |  ||||||||   ||     |||  | ||  | |     | |        | || |        |||   |   || | |   |||   | || || | |||  ||      
GAGCAGGACGTGCAGATGATGCTCGCCGCCGACGTCCACCTCGGCACCAAGAACTGCGACTTCCAGATGGAGCGCTACGTCTACAAGCGCCGCTCCGATGgtacgcatgcacccacccccacctacaggcatctcacccggctctgcttgttcgtcgatgctcacagc-tagccattacaatgttcttgccatgagatttc---

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G159237_T02 (Zea mays), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcat-tgttcttagtgttttttacaatggaatgatatg--
|||  ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||| |||| |||||||| | ||||||| | || ||||||  |    | | |||   |     ||    |  | ||| |  |  ||    || | || ||   || |  | ||||   |  |     ||   |    ||  
GAGCAGGACATCCAGATGATGCTCGCCGCCGATGTCCACCTCGGCACCAAGAACTGCGACTTCCAGGTGGAGCGCTACGTGTACAAGCGCCGCACTGATGgtaccaatccaaatctt--tcgagactaaccaaatgttt-acctccaatgcttgttgtctttgatatctagttttagatctgctcgtgttgacttctattgga

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G126821_T01 (Zea mays), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgc-tccattctca-atttctcctttttatttattt-tatgttgaaata-gt-gatttcctttgcattgttcttagtgttttttacaatggaatgatatg
|||  |||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| || |||||||| ||||| | ||| |||||| | ||||| |||  |||| | |  ||||  ||   | | ||||   |||   ||||   | | | || ||| |    || |        | |   |  | |     | || |   
GAGCAGGACATACAGATGATGCTCGCCGCCGACGTCCACCTTGGCACCAAGAACTGCGATTTCCAGATGGAGCGCTATGCCTTTAAGCGCCGCACCGACGgtatctgccttcgctctcgcatccgtgcctttttcctatccgtatgccaatacacgtagatgtagactgaaaataaaccaatcgctcgtgc--ccaagtgct---

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G145308_T01 (Zea mays), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgt----cactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg
|||  |||||| |||||||||||||| |||||||| ||||||||||| || |||||||| || |||||||| |||||||| || |||||  | ||||| |||      || || || || |   | |     |        ||    |   |||  ||         |||  |       || |     || ||  ||  |   
GAGCAGGACATACAGATGATGCTCGCTGCCGACGTCCACCTCGGCACTAAGAACTGCGATTTCCAGATGGAGCGCTACGTTTTTAAGCGACGCACCGACGgtacgtgtcttcttcactcccgcatccctgcctccccccccttcgcatgcgaatcatgtagatgacagcaaggaggccgctggtgcc--cagtgttatagtt--

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G099657_T01 (Zea mays), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgt-cactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg-
|||  |||||| |||||||||||||| |||||||| |||||||||||||| |||||||| || |||||||| || || ||||| |||||  | ||||| |||    |  | | | |   ||  || | ||||      |     |   |||     |     ||| |  |     || |    |  |  |  | || ||   
GAGCAGGACATACAGATGATGCTCGCGGCCGACGTCCACCTCGGCACCAAGAACTGCGATTTCCAGATGGAGCGGTATGTCTTTAAGCGTCGCACCGACGgtatgttctttcctcccgcatcccttcctttttgcctctccgcatgcgaatccatgtagatgttg-acaggaaggag-gccgctggcgctccagtgttacag

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G092719_T01 (Zea mays), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgc-tccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttt-tacaatggaatgatatg----
|||  |||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| || |||| ||| ||||| ||||| || ||| | ||||| |||   ||| | |  ||    || || |   || | | ||||     | | |    ||          | | | |  ||| |    || |   | |  | |      
GAGCAGGACATACAGATGATGCTCGCCGCCGACGTCCACCTTGGCACCAAGAACTGCGATTTCCAGACGGAGCGCTATGTCTTTAAACGCCGCACCGACGgtatgtgccttcgctcctgcttccttccccttttcttttttcctccgca-tgccaatcc-----atgtagatgtaggtgctccagtagaccagtactacagttctg

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G099657_T03 (Zea mays), 5'ss of exon 1
---------GAGACGGACATCCAGAT--GATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctc-ctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg
             | |||||| |||   | ||| || | |||  || |  |    |  |   | |     ||||  | ||  |  |    |||     ||||   | |     ||  ||  | |   ||        |    |        | |     ||     |   | |    ||  | ||    |       | |            
GCGCCGCCACTCCCTGACATCGAGACCGGCTGCCCGACCCCG--GTCCGGCGATCCCTCTGCACCCCTTTCTTTGCGCTGCCAGCCCCAATCTCT---CGCATCCctgtcaaccatggcggcgtcagcaggcggaggcgcggtgcgcgcgctgtcccagaaggagcaggacatacagatgatgctcgcggccgacgtccacctcg-------

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G04770.1 (Arabidopsis thaliana), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtca-ctgctccattctca-----atttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg
||  | || |||||||||||| |  | ||||| |||||||| || |||||||||||| ||| ||||||||| || || ||||||||  |  |   ||| ||| | ||    |||  |||     |||||    |     | ||| ||| | |||  |  | || |     ||||  |||    ||   |||| |    ||  |   
GAAGCTGATATCCAGATGATGTTATCAGCCGATGTTCACCTTGGTACCAAAAACTGCAACTATCAGATGGAGCGTTATGTCTTCAAAAGACGCGACGACGgtaaactatctcatcttcatccaaatttcattgtacatgtaattctatatagaagcaacgtttcc----acattcatctacacgtagcttacgaattgatagtt--

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g00610.t01 (Vitis vinifera), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgt----cactgctc-cattct-caatttctcctttttatttattttatgttgaaatag-tgatttc-ctttgcattgttcttagtgttttttacaatggaatgatatg
||   |||||| |||||||||||||||||||| ||||||||||| ||||| |||||  |||| ||||||||||| ||||||||||||||| | |  ||||||     |   ||| |||||| |||||||   ||   || | |  | | ||  | | | ||||||  || |   | | |||   |||   ||    |           
GAACAGGACATACAGATGATGCTCGCCGCCGAGGTTCACCTCGGTACCAAGAACTGTAACTTCCAGATGGAACGTTACGTCTTCAAGCGCCGCAATGATGgtactctatctctctcattcttcaatttcctgttgaaatctttcgtctcttcgattgggtgatttttctctttgtcgatctgcatgtgcatttttctttc--------

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S173_16V6.1 (Physcomitrella patens), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattc--tcaatttctcctttttattt--attttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg-----------------------------------------------------------------------------------------------
||||  ||  | ||||||||||| || || || || |||||||||||||| ||||||||||| |||||||| |||||||| |  |||||  |  |||||||| |   |||  | |  || |||  |  |  |  |     | |  | | |   | |   |    |  | | | |   |  | |   | | || ||   |   ||                                                                                               
GAGAGCGATGTGCAGATGATGCTGGCTGCTGATGTGCACCTCGGCACCAAGAACTGCGACTTCCAGATGGAGCGCTACGTGTGGAAGCGGCGCTCCGATGgtgagaactctgtcccctccattgtttgtcctcgtcccggtgtgttatcggtgtgggcttggggtgagaagtttctgtgttatgaatgataagggttcggggtgaagatacaagtttttttttggacgtgtgtatatgttttggacgggtcgtggtttggggtggttgactattgtggcttggcgggtccgttgcgcag

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S209_48V6.1 (Physcomitrella patens), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaa---tgatatg-----------------------------------------------------------------------
||||  ||  | ||||||||||| || |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||  |||||| |  |||||||| | |    | || ||    | |      | ||    ||  ||||     |||      | | | || ||    | |       |   ||     || |  |                                                                       
GAGAGCGATGTGCAGATGATGCTGGCTGCCGACGTGCACCTCGGCACCAAGAACTGCGACTTCCAGATGGAGCGCTACGTCTGGAAGCGCCGCTCCGATGgtaattagggctttttccccctgtggcccgtgttggggtttggttgggtgcgtgtgcgagtgttcgttttttggtgcgggggcggcgcggggggtttggtgcggatggaattggtttgtgaaggtgggcgattgacgagggtagtggggtcgttgttttattctgtgtgggcag

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S59_133V6.1 (Physcomitrella patens), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatag---tgatttcctttgcattgt--tcttagtgttt--tttaca-atgga-atgatatg------------------------------------------------------------------------------------
||| | ||  | || |||||||| || ||||| || || ||||||||||| |||||||| || |||||||| || |||||||  |||||| |  ||||||||      ||   |     ||  |||||      | | |  |  || ||| |    | | || |     | ||  ||||  || ||  |||||  ||||    |  |||                                                                                    
GAGTCCGATGTGCAAATGATGCTGGCTGCCGATGTGCATCTCGGCACCAAGAACTGCGATTTCCAGATGGAGCGATACGTCTGGAAGCGCCGCTCCGATGgtattaattctcattagggttattccttagacaatttctagttgtggaatgggctcggtgtcgtcgttgtcgtcgtcttcttgcttggtttacggatgggtgcgcaatgcatgcagcgttgttcgtaacgttgcgtgccggtgctgccctccggtatgtgtggtggtaacaatgtggtcgcatcggtggacag

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S48_103V6.1 (Physcomitrella patens), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcact---gctccattctcaatttctcctttttatttatttta-----tgttgaaatagtgatttcctttgcattgttcttagtgttt--tttacaatggaatgatatg-------------------------------------------------------
||||  ||  | ||||||||||| || |||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||  |||||| |  | |||||| | |   | |       |  |  | | ||    |||  ||       |||  || |  |  |||    |||   |      | ||||  ||   |  | | || | ||                                                       
GAGAGCGATGTGCAGATGATGCTGGCTGCCGACGTGCACCTAGGCACCAAGAACTGCGACTTCCAGATGGAGCGCTACGTCTGGAAGCGCCGCTCTGATGgtaattagggtttttcctcctgtggcccgttggggtttggttaggtgcttgtgcaagtgttcgtttttggtgcgagggcgcgggggtttggttcggagggaagtggtttgtgatagtgggctgttgacgagggtagtgacgtcgttttttattttgtgtgggcag

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ20712 (Selaginella moellendorffii), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg
||  | ||||||||||||||||| ||| | | ||| || || |||||||| |||||||| || |||||||| ||||||||||  |||||| |  |||| ||| |     | | ||     |||||    |  ||   ||| || ||  | ||                                                
GAAGCCGACATCCAGATGATGCTGGCCTCGGCCGTGCATCTGGGCACCAAGAACTGCGATTTCCAGATGGAGCGCTACGTCTGGAAGCGCCGCTCCGACGgt-aagatcctagtc---gcttctcgcgatc-ttagctttgtggtgccacag------------------------------------------------

upper sequence: GLYMA15G42150.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32709 (Selaginella moellendorffii), 5'ss of exon 1
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg
||  | ||||||||||||||||| ||| | |  || || || |||||||| |||||||| || |||||||| ||||||||||  |||||| |  |||| ||| |     | | ||     |||||    |  ||   ||| || ||  | ||                                                
GAAGCCGACATCCAGATGATGCTGGCCTCGGCAGTGCATCTGGGCACCAAGAACTGCGATTTCCAGATGGAGCGCTACGTCTGGAAGCGCCGCTCCGACGgt-aagatcctagtc---gcttctcgcgatc-ttagctttgtggtgccacag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165263|gb|HO011312.1|HO011312
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|24206187|gb|BU965440.1|BU965440
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|151400068|gb|EV269882.1|EV269882
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCGTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|16996453|gb|BM085825.1|BM085825
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|213590349|gb|DB963884.1|DB963884
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|213602236|gb|DB958496.1|DB958496
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|4288364|gb|AI441322.1|AI441322
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|9901355|gb|BE610323.1|BE610323
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|213614395|gb|DB969103.1|DB969103
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGGACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|298181281|gb|HO022720.1|HO022720
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|27426853|gb|CA938373.1|CA938373
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|11412910|gb|BF424921.1|BF424921
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|213618045|gb|DB963678.1|DB963678
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|20449732|gb|BQ253848.1|BQ253848
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|7590504|gb|AW706255.1|AW706255
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|151408214|gb|EV278022.1|EV278022
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|16346929|gb|BI972524.1|BI972524
EST:     GCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: GCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|6134530|gb|AW132923.1|AW132923
EST:     AACTGCGACTTTCAGATGGAACCGCTCCGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AACTGCGACTTTCAGATGGAA-CGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|209713636|gb|BW681815.1|BW681815
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
EST: gi|19269649|gb|BM885905.1|BM885905
EST:     AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATG                         GTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG
genomic: AAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctc ... atgttttcagGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGgtcactgctccattctcaatttctcctttttatttattttatgttgaaatagtgatttcctttgcattgttcttagtgttttttacaatggaatgatatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA