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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTATAAATCTTTCTAGAACGTTTCTTCACTCCCCGAACCTGATCTCTTGCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcgcctccaaagtttgaatcttttctgcgtttcctcatctgggtcctgatccctttctcgtttttggatttgggtttgcgcag

Basic information

species Glycine max
transcript GLYMA15G41550.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021828|gb|BM092862.1|BM092862
EST:     GTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|254319185|gb|GR830533.1|GR830533
EST:     CACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: CACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|298184361|gb|HO029574.1|HO029574
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|213590337|gb|DB963872.1|DB963872
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|213618073|gb|DB963706.1|DB963706
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209701525|gb|BW667346.1|BW667346
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209726275|gb|BW659601.1|BW659601
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209723637|gb|BW662545.1|BW662545
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGCGAGGG
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAG-GAGGG
EST: gi|193713246|gb|FK651879.1|FK651879
EST:     TTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: TTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|213589807|gb|DB959418.1|DB959418
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|298190988|gb|HO038467.1|HO038467
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209717610|gb|BW679690.1|BW679690
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209706842|gb|BW653134.1|BW653134
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|254340232|gb|GR858357.1|GR858357
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|254333389|gb|GR841251.1|GR841251
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|151408797|gb|EV278605.1|EV278605
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|120531954|gb|EH260087.1|EH260087
EST:     CACACTACACCNGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: CACACTACACC-GATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|298176127|gb|HO015532.1|HO015532
EST:     GCTAGTTGCCACGCTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAGATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|19269452|gb|BM885708.1|BM885708
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|192329504|gb|FK021874.1|FK021874
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209709214|gb|BW657183.1|BW657183
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|193640045|gb|FK587138.1|FK587138
EST:     TTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: TTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|213614766|gb|DB970771.1|DB970771
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|213606522|gb|DB971318.1|DB971318
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209700685|gb|BW670461.1|BW670461
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|298195007|gb|HO043535.1|HO043535
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209708596|gb|BW678773.1|BW678773
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|192307309|gb|FK001267.1|FK001267
EST:     GCTAGTTGCCACACTACACCGATATTCCCACCAAACCCGTTTGCATTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|209717628|gb|BW653990.1|BW653990
EST:     GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: GCTAGTTGCCACACTACACCGATATTTCCACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
EST: gi|13789062|gb|BG651653.1|BG651653
EST:     ACCAAACCCGTTTGCGTTGTT                         GTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT
genomic: ACCAAACCCGTTTGCGTTGTTgtgagtgtcg ... gtttgcgcagGTTTGCGAATAAATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGT