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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCGAGCCACGAACCCAATCTCCGACGACGACGACCTCGGTCCAGGGACGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttctcgttttttcttgtttctttttttcttcgtcaactgtttttctttgctttttcttctcttctcaaatgttcttcatctggtattctgttt...

Basic information

species Glycine max
transcript GLYMA15G40590.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151399825|gb|EV269696.1|EV269696
EST:     CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGT--GC-G                         ------CAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gacactgaagCTTCTACAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
EST: gi|213598025|gb|DB972213.1|DB972213
EST:     CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAG                         CTTCTACAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gacactgaagCTTCTACAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
EST: gi|192300037|gb|FG992190.1|FG992190
EST:     CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGT--GC-G                         ------CAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gacactgaagCTTCTACAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
EST: gi|151395293|gb|EV265164.1|EV265164
EST:     CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGT--GC-G                         ------CAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gacactgaagCTTCTACAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
EST: gi|192310889|gb|FG998893.1|FG998893
EST:     CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGT--GC-G                         ------CAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT
genomic: CGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGgttttttttc ... gacactgaagCTTCTACAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGT