1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AACCTAGGCAACTCGTGCTACCTCAACAGCGTCCTCCAGTGCCTCACCTACACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatattccatttctcctcaattttaattttcttattttttcttcaatttctgtgtttttttgtactaattcgcttcgattcag
species | Glycine max |
transcript | GLYMA15G40170.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCT GTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTGEST: gi|254338163|gb|GR845519.1|GR845519
genomic: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatattcc ... ttcgattcagGTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTG
EST: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCT GTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTGEST: gi|213614614|gb|DB972854.1|DB972854
genomic: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatattcc ... ttcgattcagGTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTG
EST: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCT GTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTGEST: gi|209703601|gb|BW676271.1|BW676271
genomic: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatattcc ... ttcgattcagGTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTG
EST: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCT GTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTG
genomic: CACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatattcc ... ttcgattcagGTGATTCTTCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTAGGCAACTCGTGCTACCTCAACAGCGTCCTCCAGTGCCTCACCTACACTCCTCCTCTCGCCAATTTCTGCCTCCGTCTCCAACACTCTTCTCTCTgtaatattccatttctcctcaattttaattttcttattttttcttcaatttctgtgtttttttgtactaattcgcttcgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC