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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTCTCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccag

Basic information

species Glycine max
transcript GLYMA15G36200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g58910.1 (Oryza sativa), 5'ss of exon 1
AGGTTTCTCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccag
|||| || |||||||| |||||||||||||| || || || ||||| |||||||| || ||||||     ||| || || || ||| |  |  | || ||||    ||   ||   || |||     |   ||  |       |  | |       |||| |   |   | |    ||  || ||  ||| ||     |  |  |||
AGGTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTCGCCACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAGgtaataatttcatg--cacaaattaacggagcaatattgcagtaactgatgttgcattgtaactgacgatggtg--ttggtgtttgatcaatg----gaaatggcag

upper sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G042364_T02 (Zea mays), 5'ss of exon 1
AGGTTTCTCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagttt-ttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccag
|||| || |||||||| |||||||||||||| || || || ||||| |||||||| ||||||||||     || || || |||||  | ||  |||| ||||   ||   | || |     || |   |    |  |    ||  | ||| || |     |||  |  ||| | ||    ||  |    |||   | ||         
AGGTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTTGCCACCGTCTCTATTGCACCGTTTGCTCTCATCCTTGAGAGgtac-tactcactaca---gtactcagtttctcttgctcgatctgtataccagctagccatcactagacttgggaataatataatgtggcatgcatgcag--------

upper sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G07050.1 (Arabidopsis thaliana), 5'ss of exon 1
AGGTTTCTCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgt-ttcaattttccag
|  | || ||||||   || |||||||||||||||||||| ||||| ||||| ||  |||||||||| || || || || |||||  |  | || ||||||||      | ||  |  |||    |    | |    |||   |||||| | |    |     | || || |  |||  || || |||   | | |||  |||| |||
AAATATCCCTCAACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATTGCCACCGCCGTTATTGCACCCTTTGCTTTCTTCTTCGAAAGgtt------atatccatttaattattttcattacattctttgaattttattcgccaataatcgatagatt-gttaatggattctaactacgtatattccgttttacag

upper sequence: GLYMA15G36200.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 1
AGGTTTCTCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataaaataaacataaaccctagtgtcatcaccttgtcattttactagtttttgtcataaagctttgcaaattaatgcttactcattgtttcaattttccag
|||||||||||||||| || |||||||||||||| || ||||| ||  | || || |||||||| || || || || |||||||| ||  |  |||| |||  || || | || |||  ||| |  ||    |  | ||| || ||  |  ||||    ||  |||  |||    |||  | | |     || |||  || ||||||
AGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGg--tacattacatgaactgaaatc--agaaaaaatagcttttc-ttggatcagttccc-tcggaaa--tttattgattctttcatgt---ttttttttatgttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532886|gb|EH261019.1|EH261019
EST:     CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
genomic: CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
EST: gi|120532701|gb|EH260834.1|EH260834
EST:     CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
genomic: CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
EST: gi|298194240|gb|HO040888.1|HO040888
EST:     CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT
genomic: CACGCTTTTGCCACCGCTGTCATAGCTCCTTTTGCCATTATTTTTGAAAGgtttatataa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATTCT