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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATCGGTTTGGGCTCCTCCAACATTGGTTCTTACATTAATGGCCAATGGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttctcatattttttttttcaatttctattgtttattttgtgaggctttgttggtttttgttttcatgtgtatgtgattattggttattggtgatttgaaattag

Basic information

species Glycine max
transcript GLYMA15G19670.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311334|gb|FK003791.1|FK003791
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|298176954|gb|HO026961.1|HO026961
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|254315873|gb|GR825682.1|GR825682
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|192296158|gb|FG989743.1|FG989743
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|192311335|gb|FK003792.1|FK003792
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|207705100|gb|GD685621.1|GD685621
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|151412062|gb|EV281874.1|EV281874
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|15813460|gb|BI785735.1|BI785735
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCTATATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|208132563|gb|GD933072.1|GD933072
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|27446368|gb|CA953491.1|CA953491
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|254317668|gb|GR826652.1|GR826652
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|209718196|gb|BW657828.1|BW657828
EST:     GAAAGCCACTGGNTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
genomic: GAAAGCCACTGG-TTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG
EST: gi|13181628|gb|BG352968.1|BG352968
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATCG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... ttgaaattagAGCATAGCTCAAGTGACTGAAGCGACTTTGCAAGATTATGAGGAGGGATTG