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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTCATTGATGACAAGCTTAGGCATGGCCTCAAGGCTCAACCGGTGGCTGTTAAGCTCTTGGACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGgtacgtatgctactttgttttcttccgcataattaaattagtgtcaaatacgcggcttatctggttttcacagtggagaatatatgtgatctaaatcaaa...

Basic information

species Glycine max
transcript GLYMA15G19600.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G19600.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 1
GGGGTTCATTGATGACAAGCTTAGGCATGGCCTCAAGGCTCAACCGGTGGCTGTTAAGCTCTTGGACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGgtacgt--atgctactttgttttcttccgcataattaaattagtgtcaaatacgcggcttatctggttttcacagtggagaatatatgtgatctaaatcaaa-
||| |||||||||||||||||  | | |||  | |||||||| || |||||||| ||||| ||||| ||||| |||| |||||||||   ||| ||| ||||  ||  | | |  ||  |||| ||   ||  ||| ||||    | ||         |    ||||  | | | ||| |  | |   |    |  ||   | 
GGGCTTCATTGATGACAAGCTCCGCCCTGGTTTGAAGGCTCAGCCCGTGGCTGTCAAGCTTTTGGATTTGGAAGGCTTGCAGGGCCATCGAGAATGGCTGgtgagttcaagttcgttctttttattttccagtattgaattttccttaa---------tgggttggtgatga-aatggtgttttttccttcctttgattgcag