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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCTCCTTTGTGTCGCTTCCACGTGGCGGGAACCATCTCAAACGGATACGATTCAGgtacgtgtttgtcggtgaatgttaatttgttagtcgaaagtttttgttactgagaatttcatgatttttttttattttactattaaatcaatcttatatc...

Basic information

species Glycine max
transcript GLYMA15G18980.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G18980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G429658_T01 (Zea mays), 5'ss of exon 2
AGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCTCCTTTGTGTCGCTTCCACGTGGCGGGAACCATCTCAAACGGATACGATTCAGgtacgtgtttgtcggtgaatg---ttaatttgttagtcgaaagtttttgttactgagaatttcatgatttttttttattttactat-taaatcaatcttatatc
| ||  | |||||||||||||||||||||||||| |||||  | ||  |||| || || ||  | |  || || ||| |||| ||||| || || ||||||| |||   | | | |   ||   | || || |   ||| ||  ||   |||||         ||||||   |||  |||  |  | | |   ||| | ||   
ACGACGCCAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTGCTCATTACCTTCGTCTCACTGGCGCAAGGTGGCAACGATCTAAAACGTATTCGGTTCAGgtgcgttcctttggctacttgggatgaaattctgcttcgcaa--ttcgattacttgatcacaaatgattccgtttgctttctccctgtgagaaaatttgatc--

upper sequence: GLYMA15G18980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G066672_T01 (Zea mays), 5'ss of exon 3
AGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCTCCTTTGTGTCGCTTCCACGTGGCGGGAACCATCTCAAACGGATACGATTCAGgtacgtgtttgtcggtgaatgttaatttgttagtcgaaagtttttgttactgag--aatttcatgatttttttttattttact-attaaatcaatcttatatc
| ||  | |||||||||||||||||||||||||| || ||  | ||| | || || || ||  |    || || ||| | || ||||| || |||||||||| |||   | ||| |   |  |      | | |    |||  |  ||    ||   ||| | ||||      | |||    |  ||  |||  | | |    
ACGACGCCAAGGAGTGGGTGGCGCAGGTGGAGCCCGGTGTGCTCATCACTTTCGTCTCACTGGCGGAAGGTGGCAACGACCTAAAACGCATTCGATTCAGgtgcgttcctttcgctccttccttggg-atgaattttcagtcctgcttcacaagtcgattacttgatcacaaatgattccgtttgttttatccttttgagc--

upper sequence: GLYMA15G18980.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g01460.t01 (Vitis vinifera), 5'ss of exon 3
AGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATCTCCTTTGTGTCGCTTCCACGTGGCGGGAACCATCTCAAACGGATACGATTCAGgtacgtgtttgtcggtgaatgttaatttgttagtcgaaagtttttgttactgagaatttcatgatttttttttattttactattaaatcaatcttatatc------
| |||||||| ||||||||||| ||||| ||||| |||||  | ||| |||| || || ||||| ||||| |||||| ||||||| || || || ||||||||| |   ||||     ||   | ||     |||   | ||| | |||| |     || |    |||      | || |  |||| |   ||     |       
ATGAGCCGAAAGAGTGGGTGGCCCAGGTCGAGCCCGGCGTGCTCATCACCTTCGTCTCCCTTCCCCGTGGAGGGAACGATCTCAAGCGCATTCGGTTCAGgtactt--ctgtcctccgattccatttcaacggtcttga-tttgttttacagt---ctttacctgtttccgacgtatttccgttaacttgttcaaggttttcagca