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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTTGCCGTTCACTCCTCCTTCCTCGCCTCTGGTTATGTCCTTACAGCTACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaaaacccttcctcccctctctactttttttttttctttcaattaatcaattttttaattgctgattttttcgatgtttgttggtgcactgcgttttgtgtgcag

Basic information

species Glycine max
transcript GLYMA15G17840.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040483|gb|BM308777.1|BM308777
EST:     TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCTCTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
EST: gi|7693170|gb|AW761267.1|AW761267
EST:     GTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: GTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
EST: gi|151408833|gb|EV278641.1|EV278641
EST:     TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
EST: gi|151401061|gb|EV270875.1|EV270875
EST:     TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
EST: gi|298198745|gb|HO042108.1|HO042108
EST:     TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
EST: gi|24135432|gb|BU925942.1|BU925942
EST:     TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
EST: gi|192300523|gb|FG991505.1|FG991505
EST:     TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
EST: gi|298168531|gb|HO009461.1|HO009461
EST:     TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATG                         ACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG
genomic: TACGGGTCCCCAGGCCCTCTCCGACGATGCGTTTTCTGACCCATCCAATGgtaataagaa ... ttgtgtgcagACGAGGTGTCCGTTGATCACTGGAACGAGCTGAACGACGAGTACGCGTTCG