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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACATGCTTTAACTTTGCGCTTCTTTCCATTTTCAATATCCAATGGCTTCTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaatttctttccttttttcgcaccctttttgtgtctcttcaatctgcacctcttaccaacattgttttctttctgaacag

Basic information

species Glycine max
transcript GLYMA15G16830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691132|gb|AW759265.1|AW759265
EST:     CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG                         TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: gi|15286356|gb|BI470247.1|BI470247
EST:     CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG                         TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: gi|7691176|gb|AW759308.1|AW759308
EST:     CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG                         TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: gi|22539829|gb|BU089672.1|BU089672
EST:     CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG                         TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
EST: gi|151409002|gb|EV278810.1|EV278810
EST:     CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAG                         TTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC
genomic: CTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGgttccaattt ... ttctgaacagTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGC