Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGCGCCGGCGCTGAATGTCCCTCCGAAGAAGGTCATCATCAAGAGCGCTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttcaacaactttcttctctctctctcttttttttatggttccttggtttggattctgtttctgggttttgttgtgcttgctgtgttgtgtcataaagtcttgacctttttgcggattattcag

Basic information

species Glycine max
transcript GLYMA15G16060.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16060.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0077g02110.t01 (Vitis vinifera), 5'ss of exon 1
ACAAGCGCCGGCGCTGAATGTCCCTCCG-AAGAAGGTCATCATCAAGAGCGCTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttcaacaactttcttctctctctctcttttttttatggttccttggtttggattctgtttctgggttttgttgtgcttgctgtgttgtgtcataaagtcttgacctttttgcggatt--attcag
  ||||    |         ||   | | |||| |||||||||||||||||| |||||||     |||||||||||||||||| | ||||| ||  |||| ||| | ||        ||  ||||||  | |||||   ||| | ||   |  ||||||   ||    |   |||  || |  || |||| |  | ||    | | |||    |    | |||   | ||||
-GAAGCTTTCGTTGGCGGCATCAGCCAGCAAGAGGGTCATCATCAAGAGCGCCGATATGAAGGATGACATGCAGAAGGAGGCCATCGATATAGCCATCGCCgttggctt------tctttctctctcaatttctttggcttaggtttttattttttggaaaatggaaataa-tttacttcttttttctgtttgatttctgtgatttttggatatgggtctgatctcaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193716433|gb|FK653697.1|FK653697
EST:     CCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|24136401|gb|BU926911.1|BU926911
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|208261468|gb|GE059123.1|GE059123
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|193618662|gb|FK567942.1|FK567942
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|193410473|gb|FK380268.1|FK380268
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         A
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcag-
EST: gi|193410473|gb|FK380268.1|FK380268
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         A
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcag-
EST: gi|207775556|gb|GD747323.1|GD747323
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|193518425|gb|FK476682.1|FK476682
EST:     CCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGCCGCGGAACAGATAAAGAAG
genomic: CCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|193617201|gb|FK571227.1|FK571227
EST:     CCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|207766817|gb|GD735617.1|GD735617
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|208047034|gb|GD846035.1|GD846035
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|208237838|gb|GE030792.1|GE030792
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|193616068|gb|FK568680.1|FK568680
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|193622739|gb|FK571051.1|FK571051
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|207680422|gb|GD661824.1|GD661824
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
EST: gi|208228020|gb|GE024644.1|GE024644
EST:     CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCT                         GCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG
genomic: CTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttca ... gattattcagGCGTTTGAGAGGTACAATGTGGAGAAAGACGTCGCGGAACAGATAAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGCGCCGGCGCTGAATGTCCCTCCGAAGAAGGTCATCATCAAGAGCGCTGATATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCTGTCGCTgttagtttcaacaactttcttctctctctctcttttttttatggttccttggtttggattctgtttctgggttttgttgtgcttgctgtgttgtgtcataaagtcttgacctttttgcggattattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG