Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAGAAGAGAGAGAGCAAGTGACAAGAGTGGAGTGAGAGATAGTGACTGCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagcaccgcaatgcatcatctctcttcgattttcagtttcctctcaaaaactcacttttcgtgaaaattggttttcgatttttttgtttttttttgcag

Basic information

species Glycine max
transcript GLYMA15G14390.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207691238|gb|GD673064.1|GD673064
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|298167421|gb|HO012684.1|HO012684
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|193354270|gb|FK319842.1|FK319842
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAGG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|11273760|gb|BF324155.1|BF324155
EST:     TCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: TCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192301718|gb|FG994412.1|FG994412
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|298177896|gb|HO021921.1|HO021921
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|9985866|gb|BE660093.1|BE660093
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|213592499|gb|DB971641.1|DB971641
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCAATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|209726535|gb|BW658089.1|BW658089
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|193656306|gb|FK603352.1|FK603352
EST:     ATCTTCTTCCATGGAACAG                         TTCGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: ATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|298179279|gb|HO027750.1|HO027750
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|298193236|gb|HO033670.1|HO033670
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAGG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|151411049|gb|EV280860.1|EV280860
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCACAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|41145798|gb|CK606009.1|CK606009
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192302862|gb|FG998544.1|FG998544
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192304397|gb|FG996719.1|FG996719
EST:     GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAGAGAAGAGAGAGAGCAAGTGACAAGAGTGGAGTGAGAGATAGTGACTGCAAAACCGCTCCAGCCTTGTTTCTTCTCAGATCTTCTTCCATGGAACAGgttcgtagcaccgcaatgcatcatctctcttcgattttcagtttcctctcaaaaactcacttttcgtgaaaattggttttcgatttttttgtttttttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA