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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag

Basic information

species Glycine max
transcript GLYMA15G13670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||| |  | |||||||||||  | ||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||| || ||||  | |||    |   ||   || |       || |   | |       | ||| ||||||     | ||  |   || |  | ||   | ||  || ||  |    | ||
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaag-ctgcggatccatggatttctctccgtttcccccttgt------catttcgatttct----gatttctg---ttctgattttgggacctcgtggtgaatccccgcag

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g54860.1 (Oryza sativa), 5'ss of exon 1
-AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattat-tatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatc-tgttgttgggtttttgtag
 | ||| |  | |||||||| | | | ||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||| || ||||  |    |||      |    | |     |||    || | |     ||    |  | || |    | |   |  ||  || ||  |       |  ||        || ||
AAGTACCTCCGCTTCCTCCGAAGAGG-ATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctaatcaaaccccgaagctgtgcggatcaatggatttctctccgctttccccttgtcatttcgattcctgttctgattttgcgtcggcggcgcggtgaatcccctgcag

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G090422_T01 (Zea mays), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||| |  | ||||||||||| || ||||||||||| || ||||| || || ||||||||||||||||| ||||||||| | ||||||||| | || |||| |||| |  ||     |        ||  | ||| || | |    ||| |   |  | |||      ||| ||   || ||| |      |||| | ||    |||| ||
AGTACCTCCGCTTCCTCCGCAAGCGGATGAACACCAAGCCGTCCCACGGGCCCATCCACTTCCGCGCCCCCGCCAAGATCCTGTGGCGCACCATCCGCGGgtatgtcagcaacgccacgccgcccggatc-cgtctgatttctt---ccttgcg-acgtgctttgtggcttgtgaggcttatgtttg-----ctgtggctga---tttgcag

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
    | |  | || |||||||| || ||||||||||| || |||||||| || |||||||||||||||||  |||||||| | ||||||||| | || |||| |||  |  ||   |   |       |    | |||| |        |    |    | ||     | || ||  | |  ||| |    | |||| |   |         
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggatccgtccggtttcattt--------tgccacgtcctttttggctggtgagatttatgcgtgctgcg-tttgttttgcag---------

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G072315_T01 (Zea mays), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||| |  | || |||||||| || ||||||||||| || |||||||| || |||||||||||||||||  |||||||| | ||||||||| | || |||| |||  |  ||   |   |       |    | |||| |        |    |    | ||     | || ||  | |  ||| |    | |||| |   |         
AGTACCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGgtgtgtaagcaacacctgcctggatccgtccggtttcattt--------tgccacgtcctttttggctggtgagatttatgcgtgctgcg-tttgttttgcag---------

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G48760.1 (Arabidopsis thaliana), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattatt---atttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactt-tttgtgtttta-atctgttgttgggtt-tttgtag---------------------------------------------------------------------------------
| ||| |||| || || |||||||| |||||||| ||||| || ||||| ||||| |||||||| || ||  |||| ||||||||||| || ||||| ||||  || | ||| | | | ||||   |   |||  ||    | |  | ||  |  |     |||||     ||  |||     ||||||||| | |  | |   ||  |  ||||| |                                                                                 
AGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGgttcgtatatcaatctctcttatctctccaattagatgaggtttcgagaaattgat---ggttcttgctctgtatggattaagtttgtgtttgatacttatgagtgaatcatttgtggttgatttcaattcaatgcttttgaaatgatgatttagatagcagagtgattcatagttgttatgtgttttgatttgtgaag

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatg-tataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||| |||| || ||||| || || |||||||| ||||| || || || ||||| |||||||| || ||  |||||||||||||||| |||||||| ||||  ||   |    | |   | |  || | | || |   | ||   |  | ||  |   || |  |  | ||  | ||| |   |  | ||    |    |            
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctctctctggttttgttatttttagctactgattcgagcaccgatttt--atgaatttagtactgtgaataatgtagaaagcgcata-----------

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G24830.1 (Arabidopsis thaliana), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttca--atttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||| |||| || ||  | |||||||||||||| ||||| || ||||| ||||| || ||||| || ||  | |||||||||||||| |||||||||||||  || |       | |  | | |   | | |    | ||    | | ||||     |||  | |||| |  |   |   |||| || ||    | |||    ||| ||    
AGTACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtat-------tctaatctcacagtctta----aagttcttagcttagtatgtgattcttgaaaatgaagattagaatttgagtattgggtttttggaaagttgtta---

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G13170.1 (Arabidopsis thaliana), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||| ||||||||||  | ||||| |||||||| || || || ||||| ||||| ||||| || || ||  ||||||||||||||||||| ||||| ||||  ||  ||    | |  || |  | ||||  | |     | |     ||  |  ||   |     |  || |   | ||||| |     ||  ||  |            
AGTACATGAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTTCGTGCTCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGgttcgttcgttcactctaattttcttcatttt-tattggagaaagtttgtaactttatgattagtgcaaatgcgttttctttgtatagatttcgattactc-----------

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||| |||| ||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||  |||||||| ||||||| ||| | |||||||  ||   | |  ||||  | || |    | |||  |   || | |    ||      |||        |||    ||    || | ||||  | |||| ||||||| |  
AGTACCTGAGGTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCATGGGCCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttattaatatttttctgttgt--ccttatcagaaaaatgagagt--gtcatgggtctggccctcctgg----ttcaaatgatctaat--gctgtttggtttttct--

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0029g00020.t01 (Vitis vinifera), 5'ss of exon 1
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgt--gttttaatctgttgttgggtttttgtag--------------------------
| ||  |  | ||||||||||| |||||||||||||| || ||||||||||| |||||||||||||| ||  |||||||| ||||| | ||| | || ||||  |  || |   |  | |||| ||| ||     |  | |||   ||  |    | ||| ||  |   ||   |  | ||| |   | | |  || |  ||| |    |  |                           
AGTATCTTCGCTTCCTCCGCAAGCGCATGAACACCAAGCCTTCCCATGGCCCAATCCACTTCCGCGCTCCCTCCAAGATCCTCTGGAGGACCATACGCGGgtgagcttgacttatcattttat-atttttctgcattttctattccacgaaacgaagtttttttcattattttcatttatttattaatatgatgctttgattgagccaataaaatcccaaaatctctttctggtttgtag

upper sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
lower sequence: EDP03478 (Chlamydomonas reinhardtii), 5'ss of exon 3
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag
| ||     | ||||| ||||| |||||||||||||| ||| |||  |||||  ||||||||||||||||  |    ||||||||||| || || || ||||  ||           |    |  |  |  |        ||  || | | |||         |  ||| ||  | ||         | ||  ||  |  |           
AGTATGACCGCTTCCTGCGCAAGCGCATGAACACCAACCCCACCCGCGGCCCCTTCCACTTCCGCGCCCCCTCGCGCATCTTCTGGCGGACTGTGCGCGGgtgagtagcatgtcggcttgcgtcgtcgtcgcggggggccta-gaagcttggtttggaagggcagcaagctgatatctcgcgaatactgaacttgacgcgg-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203983|gb|BE330207.1|BE330207
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|193345625|gb|FK313736.1|FK313736
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAT
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|193423956|gb|FK390295.1|FK390295
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAT
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|254343697|gb|GR857453.1|GR857453
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|27427510|gb|CA939030.1|CA939030
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298163268|gb|HO012001.1|HO012001
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|16347249|gb|BI972844.1|BI972844
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298168387|gb|HO009317.1|HO009317
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298166806|gb|HO010245.1|HO010245
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298168781|gb|HO009711.1|HO009711
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|9986840|gb|BE660948.1|BE660948
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|24205749|gb|BU965002.1|BU965002
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|193710761|gb|FK644672.1|FK644672
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|16348184|gb|BI973779.1|BI973779
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|254343696|gb|GR857452.1|GR857452
EST:     CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA