Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACGTCGCCGGCCTCGACAACTTTATCAGAACCGTCAATCTCGCCTCCTGCGGCCTCTCCTATGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcattcctccttcgatcttccactcttgccgattccgattgcttgatttacttccctcgaacttgtgctgtgattcttttgtgtttgttgagct...

Basic information

species Glycine max
transcript GLYMA15G13380.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 1
TTCAACGTCGCCGGCCTCGACAACTTTATCAGAACCGTCAATCTCGCCTCCTGCGGCCTCTCCTATGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcattcctccttcgatcttccactcttgccgattccgattgcttgatttacttccctcgaacttgtgctgtgattcttttgtgtttgttgagct
|||   | || |  |   ||   ||| ||     |||      |||||  ||||||||||||||| ||||||||| | ||||||||||| ||||| |||||| ||| |   ||     |   | ||    | || |||   ||  |  | |||   |  ||      | || |   |||||   |   | | | |     
TTCGCGGCCGACTCCGCGGAGCGCTTCATGGCGGCCGCGGGCGTCGCCGGCTGCGGCCTCTCCTACGCCGTCGTCTCCATCATGGGACCCCAGAGCAGCGgtacgtacggacccatcccatccctcgcgccatgtcgagatcgcctcatcgatcggccgccgcgcgccatgcgtcatgattgggtatcgatcgatccctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604826|gb|DB960535.1|DB960535
EST:     CTGCGGCCTCTCCTATGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCG                         GGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGG
genomic: CTGCGGCCTCTCCTATGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcat ... ttgtgagcagGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGG