1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGATTCAGGTCCTTATCACCAAGATCCAACAACTTCTCAACCACAACGAGTTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttttttaaccctttaagccaatttaattattcctgccatgaattgcaatttcttcaccccgtttgattttattaattcaattatcctttttac...
species | Glycine max |
transcript | GLYMA15G12980.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG ATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTGEST: gi|12773212|gb|BG238139.1|BG238139
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
EST: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG ATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTGEST: gi|213603753|gb|DB956290.1|DB956290
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
EST: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG ATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTGEST: gi|208075809|gb|GD876866.1|GD876866
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
EST: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG ATATCGAGTATCAAAAAACGGCATCTGGAAAACATEST: gi|192295897|gb|FG992663.1|FG992663
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAA-CGGCATCTGGAAAACAT
EST: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAG ATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
genomic: TTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttt ... tatgaactagATATCGAGTATCAAAAACGGCATCTGGAAAACATGTCTCAATACCATGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTCAGGTCCTTATCACCAAGATCCAACAACTTCTCAACCACAACGAGTTGCTATTTCCTTCGATTCACGAACCCAGAAAATTAAAGAATTAAAAAAGgtcagatttttttaaccctttaagccaatttaattattcctgccatgaattgcaatttcttcaccccgtttgattttattaattcaattatcctttttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccccg