1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAAGTCCACATTCTTGAACGTCTATTCTGTTCTCAAATCTGAACTCCTCCACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcattttatgtatccttattttttttttaatttaaaaaaaatcatttttttcttctaatcgaagtagtcgaggatggggaaaagctgtgtcatta...
species | Glycine max |
transcript | GLYMA15G12780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|298187020|gb|HO034169.1|HO034169
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|208169021|gb|GD970538.1|GD970538
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|13789758|gb|BG652349.1|BG652349
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|9902003|gb|BE610971.1|BE610971
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGACGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|192294520|gb|FG987449.1|FG987449
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|19345889|gb|BM890769.1|BM890769
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCTTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|193699347|gb|FK639452.1|FK639452
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|298181906|gb|HO026081.1|HO026081
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|5606131|gb|AI900229.1|AI900229
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|15814471|gb|BI786746.1|BI786746
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|6071532|gb|AW100919.1|AW100919
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAGEST: gi|193471651|gb|FK435674.1|FK435674
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
EST: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGG ATGCTGGACTACAATGTGCCGGGAG
genomic: ACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcatt ... tttattgcagATGCTGGACTACAATGTGCCGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGTCCACATTCTTGAACGTCTATTCTGTTCTCAAATCTGAACTCCTCCACGACCCTGCTTTTGAGTTCTCCGATGATGCTCGTAATTGGGTCGACCGGgtatatcattttatgtatccttattttttttttaatttaaaaaaaatcatttttttcttctaatcgaagtagtcgaggatggggaaaagctgtgtcatta
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