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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgagattgcttttcaattcataaccgtctaatcaatgcgtgtaggttctttttttcctcctcattttggcaacttgttcatggtgtttttgcatgttggtgcag

Basic information

species Glycine max
transcript GLYMA15G11670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 2
CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgagattgcttttcaattcataaccgtctaatcaatgcgtgtaggttctttttttcctcctcattttggcaacttgttcatggtgtttttgc---atgttggtgcag
 ||||| ||  |||||||||| ||||||||||||||||||||||| ||||| || |||||||| ||| | ||| | |||||  | ||||||||| | |||||  |   | |  |   ||| |||  |  |||| | |  |   |   | || | ||| | |||         |      ||   | | | ||    |||||  | |||
TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacg--cgttagtttgttcttaat-gcataataattctgaaaatcctattgtattcttactc--ccaaaagaacaaaacaaaatatctatgtttaatgttttttcag

upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 2
CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgagattgcttttcaattcataaccgtctaatcaatgcgtgtaggttctttttttcctcctcattttggcaacttgttcatggtgtttttgcatgttggtgcag
 ||||| || ||||||||||| || |||||||||||||||||| |||||||||| || ||||||||  | |||||||||||||| ||||| || ||||| || ||    | |||  | | ||    ||   | |  || ||  || | |||||             | |  ||||  ||    ||||| |  |   ||  |||||
TGGTGAGATCGCCATTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGGGAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATTTCTCAgtaag-caacatttggact-attgttgtt--agctgtg-gttgagatactttt----------gagtagaaaactaatt----gtgttctatctcttt--tgcag

upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 2
CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgagattgcttttcaattcataaccgtctaatcaatgcgtgtaggttctttttttcctcctcattttggcaacttgttcatggtgtttttgcatgttggtgcag
 ||||| || || |||||||| || || |||||||||||||| |||||||| ||||| ||||||||  | ||||||||||||   |||||||  |||||||| || ||  |   | |||  | |   | || |  | | |   |   |  || |||  | | | ||  |  | || |                            
TGGTGAGATTGCTATTGGTACTCCACCGCAGAAGTTCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAGGAAAATGTTTTTTCTCGgtaagctt--tacaccatttgttagtttttagtttaagagataaaacttattgttttgttcccgtt--gttatctag----------------------------

upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 2
CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgagattgcttttcaattcataaccgtctaatcaatgcgtgtaggttctttttttcctcctcattttg------gcaacttgttcatggtgtttttg--------catgttggtgcag
 |||||||| |  |||||||| || ||||| | ||||||||| || |||||||| |||||||| ||  ||||||| ||||||||||| || || ||||||||||| || | | |   |    ||      |||   |  ||| |  || |||||| | |    | || |      ||||     ||||  ||| ||||        ||| |||||||||
TGGTGAAATTGGTATTGGTACTCCCCCTCAAACGTTCACTGTAATCTTTGACACTGGTAGCTCAAACCTGTGGGTTCCATCATCCAAGTGCTATTTCTCGgtgagcttccatatttctgtggaatgtgacaatatgttagtgaacatttttttttccatttcaagttggttggaagcaagagaatcatcatgtgtttgaattttgtcattttggtgcag

upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ36863 (Selaginella moellendorffii), 5'ss of exon 1
CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgag-attgcttttcaattcata-accgtctaatcaatgcgtgtaggttctttttttcctcctcattttggcaacttgttcatggtgtttttgcatgttggtgcag
||| || || | |||||| | ||| || ||| |||||||||||||||||||||| |||||||| ||| | ||||| |||||    ||||||    | ||||| || ||| |     | | || |     | | ||  || | || ||                                                            
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaagtatttccaggaattccacacgttttttcatggattcttgcag------------------------------------------------------------

upper sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ27796 (Selaginella moellendorffii), 5'ss of exon 1
CGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCCAAATGTTACTTCTCGgtgagattgcttttcaattcata-accgtctaatcaatgcgtgtaggttctttttttcctcctcattttggcaacttgttcatggtgtttttgcatgttggtgcag
||| || || | |||||| | ||| || ||| |||||||||||||||||||||| |||||||| ||| | ||||| |||||    ||||||    | ||||| ||  | |     | | || |     | | ||  || | || ||                                                            
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaagtattccaggaattccacacgttttttcatggattcttgcag------------------------------------------------------------