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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCTTGCTGCTGGCTCCCTCATGATGTTAGTCTCCTGGGCCACCAGGGTTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaattcctttcttcttttttttgtatttttgtcgttttcctaattaatgtcatgaatgaatcagggttttaaattgccatcattgtaattgtagt...

Basic information

species Glycine max
transcript GLYMA15G11270.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493337|gb|EH221504.1|EH221504
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGT
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGT
EST: gi|10709050|gb|BF008711.1|BF008711
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: gi|120496169|gb|EH224336.1|EH224336
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: gi|7145687|gb|AW507609.1|AW507609
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: gi|120494126|gb|EH222293.1|EH222293
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: gi|120532933|gb|EH261066.1|EH261066
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: gi|120496437|gb|EH224604.1|EH224604
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTACCT                         GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: gi|7926235|gb|AW832261.1|AW832261
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCC
EST: gi|120494188|gb|EH222355.1|EH222355
EST:     TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCT                         GTTGCGGTGGCACACACAATTGGGCATGTTG
genomic: TTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaatt ... tattgtgcagGTTGCGGTGGCACACACAATTGGGCATGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCCTTGCTGCTGGCTCCCTCATGATGTTAGTCTCCTGGGCCACCAGGGTTGCTGAGGTCCCAAAAGTTAACTTGGACTTCTGGAAGGCCTTGTTTCCTgtaagaaattcctttcttcttttttttgtatttttgtcgttttcctaattaatgtcatgaatgaatcagggttttaaattgccatcattgtaattgtagt

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