Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTCAAAAACCCTAATTTCTTATATCATTTCACTCAGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttcctctgaaaccctaatttttctctctgcttcgatttcttgctattgggattaattatgtacgcacacaacttgttttgcag

Basic information

species Glycine max
transcript GLYMA15G08210.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326140|gb|FK016257.1|FK016257
EST:     GAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCTCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: GAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|13251887|gb|BG362790.1|BG362790
EST:     GCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: GCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|193672748|gb|FK615478.1|FK615478
EST:     GAAGCCAGA-TTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGGTCGAT
genomic: GAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|10709860|gb|BF009584.1|BF009584
EST:     AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|298172139|gb|HO021731.1|HO021731
EST:     AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|192303339|gb|FG995633.1|FG995633
EST:     AGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: AGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|208091029|gb|GD886666.1|GD886666
EST:     GCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: GCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|8826310|gb|BE210040.1|BE210040
EST:     CGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: CGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|22525238|gb|BU084049.1|BU084049
EST:     AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|213601201|gb|DB964680.1|DB964680
EST:     AGAGGGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: AGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|18730661|gb|BM526007.1|BM526007
EST:     CCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: CCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|13181588|gb|BG352928.1|BG352928
EST:     CAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: CAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|298193972|gb|HO040620.1|HO040620
EST:     GACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: GACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|192332916|gb|FK025013.1|FK025013
EST:     GACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: GACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|20811812|gb|BQ296290.1|BQ296290
EST:     AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|5058304|gb|AI736780.1|AI736780
EST:     GCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: GCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|6566557|gb|AW234200.1|AW234200
EST:     AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: AGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|18735629|gb|BM528877.1|BM528877
EST:     ACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: ACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
EST: gi|17023205|gb|BM094239.1|BM094239
EST:     GCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAG                         TTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT
genomic: GCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttc ... tgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAATTCAAAAACCCTAATTTCTTATATCATTTCACTCAGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGgtttgttttcctctgaaaccctaatttttctctctgcttcgatttcttgctattgggattaattatgtacgcacacaacttgttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG