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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGCAATGGAAATGCTCACTATGCTGCATTTCACAACCTCAATGCTGGTGTTGGCTTTCAGGCCCTCGTTTTGCCCGTTGCTTTTGCTTATCTTGGCTGgtaacttttcctagctgttcaccacgttacattacattttgcatatgttcaagttcaactgcactggtcaaaatttctgttgtgaaacagcatgcatttt...

Basic information

species Glycine max
transcript GLYMA15G07440.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07440.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 1
CTCGCAATGGAAATGCTCACTATGCTGCATTTCACAACCTCAATGCTGGTGTTGGCTTTCAGGCCCTCGTTTTGCCCGTTGCTTTTGCTTATCTTGGCTGgtaacttttcctagctgttcaccacgttacattacattttgcatatgttcaagttcaactgcactggtcaaaatttctgttgtgaaacagcatgcatttt
|||| |||||||| ||||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||| | ||||| || ||||| | |||||||||||   ||| | |   | || |       |     | |||| | | | ||  ||||            |     ||  ||||   | |     |   ||| 
CTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCTCAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTGgtgcgtttgcgtttttcttgatttttccaataatcttttttcttgtttttgagttttttcttgaactttgtgtttagtgtttcaagattatttttgttta

upper sequence: GLYMA15G07440.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g11300.t01 (Vitis vinifera), 5'ss of exon 1
CTCGCAATGGAAATGCTCACTATGCTGCATTTCACAACCTCAATGCTGGTGTTGGCTTTCAGGCCCTCGTTTTGCCCGTTGCTTTTGCTTATCTTGGCTGgtaacttttcctagctgttcaccacgttacattacattttgcatatgttcaagttcaactgcactggtcaaaatttctgttgtgaaacagcatgcatttt-------
|||||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||| ||||||||    || ||| |  | | |||   || |||    ||| | ||  ||||      | |  | |  |  |  ||||| || | |  |||      ||||       
CTCGCAATGGGAACGCTCATTACGCTGCGTTTCATAACCTCAATGCTGGGGTTGGCTTTCAGGCCCTCGTTTTGCCTGTTGCTTTCGCTTTTCTAGGCTGgta-tgatttctaccactgctccatcctatatt----ttttcttagcttcattgcgcagtttattatttga--tttctcttcttactcagtcaattttttgggtgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058423|gb|CA801337.1|CA801337
EST:     GTTGGCTTTCAGGCCCTCGTTTTGCCCGTTGCTTTTGCTTATCTTGGCTG                         GAGTTGGGGAATTCTTTCCTTAACCATAGCATATTGTTGGCAACTTTACAC
genomic: GTTGGCTTTCAGGCCCTCGTTTTGCCCGTTGCTTTTGCTTATCTTGGCTGgtaacttttc ... tatgttgcagGAGTTGGGGAATTCTTTCCTTAACCATAGCATATTGTTGGCAACTTTACAC