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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAAGGAATTCACTGCCAACAACATCCGTGACACCTTCCGTGTCATCCTTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttttcaattatttcattcggtcatctaaaaattttttttttatttatttattgttaattctctgtctgatagatttgtattttgagtgatatt...

Basic information

species Glycine max
transcript GLYMA15G06020.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06020.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G828182_T02 (Zea mays), 5'ss of exon 1
CTTCAAGGAATTCACTGCCAACAACATCCGTGACACCTTCCGTGTCATCCTTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtca-atcttttcaattatttcat-tcggtcatctaaaaattttttttttatttatttattgttaattctctgtctgatagatttgtattttgagtgatatt-
||||||||| ||||  |||||||||||| | ||||||||||| ||| |||| ||||||   || || ||||||||||| ||||| ||||| ||  |||||||   ||  | | ||| |  ||   ||     | ||    |  |   |  | |  ||||    | || | |  ||| | ||  |   |  || | |  |||| 
CTTCAAGGAGTTCAACGCCAACAACATCAGGGACACCTTCCGCGTCCTCCTGCAAATGTCCGTTGTGCTCATGTTCGGAGGCCAGATGCCTGTCGTCAAGgtagtattgtataaataaaatcgcctcaaagctttagtgttgatcgatcgaatcgtttagacatcatgcccgctcttacagcct---aaattaaatcctatta

upper sequence: GLYMA15G06020.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G33510.2 (Arabidopsis thaliana), 5'ss of exon 1
CTTCAAGGAATTCACTGCCAACAACATCCGTGACACCTTCCGTGTCATCCTTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttttcaattatttcattcggtcatctaaaaattttttttttatttatttattgttaattctctgtctgatagatttgtattttgagtgatatt
 ||||||||||| |  || || |||||  | ||||||||  | ||  | ||||| |||||||| || |||||||||||||||||  | || |||||||||||| ||  |||  |       |||      | | |  | | | |  |||   ||   ||  | ||| | ||  |  ||  |||  |              
TTTCAAGGAATTTAACGCTAATAACATTAGAGACACCTTTAGGGTTCTTCTTCAGATGGGTGTTGTTCTCATGTTCGGTGGCCAGTTACCAGTTATCAAGgtcgattcttt--acctggagatttttctgtgtgatgaatctctagttagggata-gtttatgattttgtgggttttaagttttcag-------------

upper sequence: GLYMA15G06020.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ08096 (Selaginella moellendorffii), 5'ss of exon 1
CTTCAAGGAATTCACTGCCAACAACATCCGTGACACCTTCCGTGTCATCCTTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttttcaattatttcattcggtcatctaaaaattttttttttatttatttattgttaattctctgtctgatagatttgtattttgagtgatatt
|||||||||||||| ||||||||||||| | || || ||||| || ||||| || ||||| |  || || ||||| ||||| |||||||| |||||||||||               || |  |||    |||       | |||||   ||  |    | ||  ||||||    |  || ||  ||||           
CTTCAAGGAATTCAATGCCAACAACATCAGGGATACTTTCCGGGTGATCCTCCAGATGGGAGCCGTTCTTATGTTTGGTGGACAAATGCCTGTTATCAAGgta------------cgttgctctcgagtttct------ctctttttctcttcctggaagatagatctctg---aaacgactttcatttcag--------

upper sequence: GLYMA15G06020.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ24698 (Selaginella moellendorffii), 5'ss of exon 1
CTTCAAGGAATTCACTGCCAACAACATCCGTGACACCTTCCGTGTCATCCTTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttttcaattatttcattcggtcatctaaaaattttttttttatttatttattgttaattctctgtctgatagatttgtattttgagtgatatt
|||||||||||||| ||||||||||||| | || || ||||| || ||||| || ||||| |  || || ||||| ||||| |||||||| |||||||||||   |   | ||    || |  |   |     | | || | |        | || ||| | |                                     
CTTCAAGGAATTCAATGCCAACAACATCAGGGATACTTTCCGGGTGATCCTCCAGATGGGAGCCGTTCTTATGTTTGGTGGACAAATGCCTGTTATCAAGgtacgttgctccagagtttcctcttcctggaagatagatctctgaaaggact-ttcatt-tcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213608400|gb|DB970871.1|DB970871
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCGGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|298183786|gb|HO028999.1|HO028999
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|13562776|gb|BG550996.1|BG550996
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|298190367|gb|HO032488.1|HO032488
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGGTCA-TTTGCAAAGCCGAGATCCGATTCATTTGA
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGG-TCAATTTGCAAAGCCGAGATCCGATTCATTTGA
EST: gi|16996106|gb|BM085478.1|BM085478
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|4285080|gb|AI440861.1|AI440861
EST:     AAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: AAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|26058923|gb|CA801837.1|CA801837
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|208208321|gb|GE004266.1|GE004266
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCGGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|213607977|gb|DB967175.1|DB967175
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCGGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|207783967|gb|GD755491.1|GD755491
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCGGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|7458616|gb|AW666066.1|AW666066
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGC
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGC
EST: gi|298187305|gb|HO034454.1|HO034454
EST:     TTCAAACGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|298169387|gb|HO020747.1|HO020747
EST:     TTCAAATGGGTGTGGTCCCCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|209715950|gb|BW650967.1|BW650967
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCGGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGATCCGATTCATTTGAG
EST: gi|11275080|gb|BF325403.1|BF325403
EST:     TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAG                         GTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGA
genomic: TTCAAATGGGTGTGGTCCTCATGTTCGGTGGCCAAATGCCCGTTATCAAGgtcaatcttt ... ggtgattcagGTGGGGAGAATGGCAGGTCAATTTGCAAAGCCGAGA