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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCATTTTCGCGGCGCACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttctcttccactgttattcatccgcaatggttaacattgttatcaccatctcatctaccctaggctttgtatctggagttcaattgaattttgc...

Basic information

species Glycine max
transcript GLYMA15G05670.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469403|gb|CD411431.1|CD411431
EST:     TTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGTAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: TTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|31467235|gb|CD409263.1|CD409263
EST:     GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACCAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|208118739|gb|GD919682.1|GD919682
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATA                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|58014502|gb|CX701244.1|CX701244
EST:     GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|208062287|gb|GD857635.1|GD857635
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAAGTAAAGGAGTGCA
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAG-AGT-AAGGAGTGCA
EST: gi|13791555|gb|BG654146.1|BG654146
EST:     GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|31311850|gb|CD397053.1|CD397053
EST:     GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCACCGTCACCATG                         GTGAACGTTCCGTAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|24135500|gb|BU926010.1|BU926010
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|151409643|gb|EV279451.1|EV279451
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|4313639|gb|AI460758.1|AI460758
EST:     TCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: TCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|58014790|gb|CX701532.1|CX701532
EST:     CAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: CAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|6847594|gb|AW349803.1|AW349803
EST:     CTCTGCTTNNTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: CTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|193521346|gb|FK478595.1|FK478595
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTTAAGGAGTGAAC
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAG-TAAGGAGTG--C
EST: gi|31468057|gb|CD410085.1|CD410085
EST:     GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|21602280|gb|BQ612602.1|BQ612602
EST:     GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|6667627|gb|AW279078.1|AW279078
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|151412143|gb|EV281955.1|EV281955
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|18848936|gb|BM568046.1|BM568046
EST:     GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|7691471|gb|AW759598.1|AW759598
EST:     TGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: TGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|18041170|gb|BM309455.1|BM309455
EST:     GGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: GGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|298197799|gb|HO039338.1|HO039338
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|192332711|gb|FK025368.1|FK025368
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|192298522|gb|FG989213.1|FG989213
EST:     ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|192303123|gb|FG994241.1|FG994241
EST:     TTCGGATTCCGATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: TTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|6747108|gb|AW317564.1|AW317564
EST:     ATCGCACGCGCCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: ATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
EST: gi|16280944|gb|BI944229.1|BI944229
EST:     AGAACTCTGCTTCTTCGGATTCCGATCGCACGC-CCGTCACCATG                         GTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG
genomic: AGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttct ... taataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTCATTTTCGCGGCGCACAGCAGAACTCTGCTTCTTCGGATTCCGATCGCACGCGCCGTCACCATGgtaaccttctcttccactgttattcatccgcaatggttaacattgttatcaccatctcatctaccctaggctttgtatctggagttcaattgaattttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc