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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCTTCTGCTGCGTAAAGTTGATTCTTTTCTGATTCTTCCGTAGATTTCATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtctcccaaatccaaactgtactctctctctctctctctctctctctctctcttcattcaaacaatctgaggagggtttcttcaaatctggat...

Basic information

species Glycine max
transcript GLYMA15G05490.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193339086|gb|FK304405.1|FK304405
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|207818666|gb|GD791537.1|GD791537
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|209699061|gb|BW664315.1|BW664315
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|193415420|gb|FK381024.1|FK381024
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|254325987|gb|GR838868.1|GR838868
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|207777388|gb|GD746999.1|GD746999
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208259978|gb|GE059364.1|GE059364
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTG
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTG
EST: gi|207812435|gb|GD785349.1|GD785349
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGGCTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208035625|gb|GD837313.1|GD837313
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208199637|gb|GD999920.1|GD999920
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGG
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGG
EST: gi|207682728|gb|GD666359.1|GD666359
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGA
EST: gi|213614966|gb|DB957032.1|DB957032
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208229089|gb|GE024691.1|GE024691
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208191874|gb|GD992858.1|GD992858
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGTAGTTTTGATAGA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGG-AGTTTTGATAGA
EST: gi|208277460|gb|GE081243.1|GE081243
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|193371093|gb|FK337334.1|FK337334
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|207750186|gb|GD723354.1|GD723354
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|193454939|gb|FK418244.1|FK418244
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTT
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTT
EST: gi|208254346|gb|GE054756.1|GE054756
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGA
EST: gi|209704292|gb|BW683520.1|BW683520
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|298175319|gb|HO015978.1|HO015978
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208196278|gb|GD988581.1|GD988581
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAG
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAG
EST: gi|192295815|gb|FG990867.1|FG990867
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208248940|gb|GE049575.1|GE049575
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|193670965|gb|FK613801.1|FK613801
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208225034|gb|GE023451.1|GE023451
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|151394349|gb|EV264220.1|EV264220
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208107899|gb|GD905687.1|GD905687
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|208217077|gb|GE013849.1|GE013849
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
EST: gi|298192766|gb|HO033200.1|HO033200
EST:     CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAG                         GTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA
genomic: CATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtc ... tgcgttgcagGTGAAGGTTTGCTTTTGATCCGGCTTGGGAGTTTTGATAGACTTGATTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATCTTCTGCTGCGTAAAGTTGATTCTTTTCTGATTCTTCCGTAGATTTCATCTCTGAAACTAGTTCTAATACTTTATCTACAGATCTCTATATTCTAGgtatgttgtctcccaaatccaaactgtactctctctctctctctctctctctctctctcttcattcaaacaatctgaggagggtttcttcaaatctggat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggagg