1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAAGGCAAAAGCAGTGATACCAATGGGGAGCACGGCGGTGGAGAAGACGGAGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctctctctctctgcatattcatatctgtgtgtgttggaattgtttcttatgtttgttagtttttgtag
species | Glycine max |
transcript | GLYMA15G05410.5 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGEST: gi|298196968|gb|HO041735.1|HO041735
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGEST: gi|193530235|gb|FK486994.1|FK486994
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGEST: gi|207770399|gb|GD744141.1|GD744141
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAG
EST: CTTCTTCGCCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGEST: gi|7925292|gb|AW831318.1|AW831318
genomic: CTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGEST: gi|213590293|gb|DB963856.1|DB963856
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCACCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGEST: gi|208167736|gb|GD963834.1|GD963834
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: AACTCCGCAACGAGATCGATGAGCTTCCTCGCCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCGEST: gi|254317253|gb|GR826198.1|GR826198
genomic: AACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
EST: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAG ATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
genomic: AGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctc ... gtttttgtagATTACGGAGAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTTCCTTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGGCAAAAGCAGTGATACCAATGGGGAGCACGGCGGTGGAGAAGACGGAGGAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGgtcctctctctctctctctgcatattcatatctgtgtgtgttggaattgtttcttatgtttgttagtttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT